Jayna Raghwani

Research Interests

Publications

Total publications: 11
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission.
Aggarwal D, Warne B, Jahun AS, Hamilton WL, Fieldman T, du Plessis L, Hill V, Blane B, Watkins E, Wright E, Hall G, Ludden C, Myers R, Hosmillo M, Chaudhry Y, Pinckert ML, Georgana I, Izuagbe R, Leek D, Nsonwu O, Hughes GJ, Packer S, Page AJ, Metaxaki M, Fuller S, Weale G, Holgate J, Brown CA, Orton A, Douthwaite J, Rees S, Brown C, Clark R, Jones DR, Kuenzi F, Rankin J, Waddell I, Maxwell P, Matheson N, Abell C, Braithwaite V, Brierley C, Crowcroft J, Dahal A, Faulkner K, Glover M, Goodfellow I, Greatorex J, James L, Lehner P, Leslie I, Liddell K, Margolis B, Morgan S, Sheridan L, Valletta S, Vignoles A, Vinnell M, Wills M, Hilborne S, Berry S, Kahkeshi MB, Hancock D, Winster J, Enright J, Samworth R, Samtani V, Ahmadi-Assalemi G, Feather T, Goodall R, Hoensch S, Johnson D, Hunt M, Mathieson N, Nikitina K, Sheldrake Z, Keen M, Sato A, Connor D, Tolhurst J, Williman J, Hollamby V, Jordan S, Fatseas T, Taylor P, Georgiou C, Caspersz M, McNulty C, Davies R, Clarke R, Danaei D, Dyer R, Glew R, Lambson O, Gibbs K, Mozdzen B, Raub G, Radecki A, White P, Hughes R, Gransden L, Ceaser M, Sing R, Wilson K, Parlikad A, Dhada M, Ridgman T, Mungovan D, Matthews S, Searle P, Mills J, Neely A, Henderson R, Murphy E, Russell M, Freeling A, Poppitt S, Tynan J, Knapton J, Marchetti F, Angelis DD, Feltwell T, Hadjirin NF, Hamilton WL, Jahun A, Pinckert M, Shaw A, Chaudhry A, Brown NM, Mactavous L, Hannan S, Hosaja A, Leong C, Wright J, Quinnell N, Workman C, Ferris M, Wright G, Wright E, Aggarwal D, Brooks E, Carabelli AM, Churcher CM, Galai K, Girgis ST, Gupta RK, Ludden C, McManus GM, Palmer S, Peacock SJ, Smith KS, Allara E, Bibby D, Bishop C, Bosworth A, Bradshaw D, Chalker V, Chand M, Dabrera G, Ellaby N, Gallagher E, Groves N, Harrison I, Hartman H, Hopes R, Hubb J, Hutchings S, Lackenby A, Ledesma J, Lee D, Manesis N, Manso C, Mbisa T, Miah S, Muir P, Osman H, Patel V, Pearson C, Platt S, Pymont HM, Ramsay M, Robinson E, Schaefer U, Thornton A, Twohig KA, Vipond IB, Williams D, Hamilton WL, Aigrain L, Alderton A, Amato R, Ariani CV, Barrett J, Bassett AR, Beale MA, Beaver C, Bellis KL, Betteridge E, Bonfield J, Bronner IF, Chapman MHS, Danesh J, Davies R, Dorman MJ, Drury E, Durham J, Farr BW, Foulser L, Goncalves S, Goodwin S, Gourtovaia M, Jackson DK, James K, Jamrozy D, Johnston I, Kane L, Kay S, Keatley J-P, Kwiatkowski D, Langford CF, Lawniczak M, Lensing SV, Leonard S, Letchford L, Lewis K, Liddle J, Livett R, Lo S, Makunin A, Martincorena I, McCarthy S, McGuigan S, Moll RJ, Nelson R, Oliver K, Palmer S, Park NR, Patel M, Prestwood L, Puethe C, Quail MA, Rajan D, Rajatileka S, Redshaw NM, Scott C, Shirley L, Sillitoe J, Thurston SAJ, Tonkin-Hill G, Tovar-Corona JM, Weldon D, Whitwham A, Hosmillo M, Attwood SW, du Plessis L, Zamudio ME, Francois S, Gutierrez B, Kraemer MUG, Raghwani J, Vasylyeva TI, Zarebski AE, Alikhan N-F, Aydin A, Baker DJ, de Oliveira Martins L, Kay GL, Le-Viet T, Mather AE, Meadows L, O?Grady J, Rudder S, Trotter AJ, Illingworth CJ, Jackson C, Aranday-Cortes E, Asamaphan P, Broos A, Carmichael SN, da Silva Filipe A, Hughes J, Jesudason NG, Johnson N, Li KK, Mair D, Nichols J, Nickbakhsh S, Niebel MO, Nomikou K, Orton RJ, Robertson DL, Shah RN, Shepherd JG, Singer JB, Starinskij I, Thomson EC, Tong L, Vattipally S, Ash A, Koshy C, Cortes N, Kidd S, Lynch J, Moore N, Mori M, Wise E, Curran T, Fairley DJ, McKenna JP, Adams H, Bonsall D, Fraser C, Golubchik T, Cogger BJ, Hassan-Ibrahim MO, Malone CS, Reynolds N, Wantoch M, Afifi S, Beer R, John M, Maksimovic J, McCluggage K, Morgan S, Spellman K, Bresner C, Connor TR, Fuller W, Guest M, Gulliver H, Kitchen C, Marchbank A, Merrick I, Munn R, Price A, Southgate J, Workman T, Patel A, Snell LB, Batra R, Charalampous T, Edgeworth J, Nebbia G, Beckett AH, Robson SC, Aanensen DM, Abudahab K, Menegazzo M, Taylor BEW, Underwood AP, Yeats CA, Berry L, Boswell T, Clark G, Fleming VM, Howson-Wells HC, Jones C, Joseph A, Khakh M, Lister MM, Smith W, Willingham I, Bird P, Fallon K, Helmer T, Holmes C, Tang J, Blakey V, Campbell S, Raviprakash V, Sheriff N, Williams L-A, Carlile M, Debebe J, Holmes N, Loose MW, Moore C, Sang F, Wright V, Coll F, Betancor G, Signell AW, Wilson HD, Davis T, Eldirdiri S, Kenyon A, Torok ME, Lowe H, Moses S, Bedford L, Moore J, Stonehouse S, Awan AR, Fisher CL, BoYes J, Atkinson L, Breuer J, Brown JR, Harris KA, Lee JCD, Shah D, Storey N, Flaviani F, Alcolea-Medina A, Vernet G, Williams R, Chapman MR, Chatterton W, Heaney J, Levett LJ, Pusok M, Xu-McCrae L, Bashton M, Smith DL, Young GR, Bolt F, Cox A, Holmes A, Madona P, Mookerjee S, Price J, Randell PA, Boyd O, Nascimento FF, Geidelberg L, Johnson R, Jorgensen D, Ragonnet-Cronin M, Rowan A, Siveroni I, Taylor GP, Volz EM, Smollett KL, Loman NJ, McMurray C, McNally A, Nicholls S, Poplawski R, Quick J, Rowe W, Stockton J, Nunez RTM, Breen C, Cowell A, Mason J, O?Toole E, Robinson TI, Watts J, Sluga G, Ahmad SSY, George RP, Machin NW, Halstead F, Hogsden W, Sivaprakasam V, Carden H, Hale AD, Harper KL, Macfarlane-Smith LR, Burton-Fanning S, Collins J, Eltringham G, Payne BA, Taha Y, Waugh S, O?Brien S, Rushton S, Blacow R, Bradley A, Maclean A, Mollett G, Dewar R, McHugh MP, Templeton KE, Wastenge E, Coupland L, Dervisevic S, Meader EJ, Stanley R, Smith L, Barton E, Graham C, Padgett D, Scott G, Greenaway J, Swindells E, McCann CM, Nelson A, Yew WC, Andersson M, Crook D, Eyre D, Justice A, Peto T, Duckworth N, Sloan TJ, Walsh S, Bicknell K, Chauhan AJ, Elliott S, Glaysher S, Impey R, Lloyd A, Wyllie S, Levene N, Monaghan L, Bradley DT, Wyatt T, Curran MD, Parmar S, Holden MTG, Shaaban S, Adams A, Asad H, Birchley A, Bull M, Coombes J, Corden S, Cottrell S, Craine N, Cronin M, Davies A, Lacy ED, Downing F, Edwards S, Evans JM, Fina L, Gaskin A, Gatica-Wilcox B, Gifford L, Gilbert L, Graham L, Heyburn D, Hilvers E, Howe R, Jones H, Jones R, Jones S, Kumziene-SummerhaYes S, McKerr C, Moore C, Morgan M, Pacchiarini N, Perry M, Plimmer A, Rey S, Shankar G, Taylor S, Watkins J, Williams C, Casey A, Ratcliffe L, Acheson E, Molnar Z, Simpson DA, Thompson T, Auckland C, Ellard S, Jones CR, Knight BA, Masoli JAH, Haque T, Hart J, Irish-Tavares D, Mahungu TW, Witele E, Dadrah A, Fenton ML, Saluja T, Symmonds A, Bourgeois Y, Scarlett GP, Cook K, Dent H, Fearn C, Goudarzi S, Loveson KF, Paul H, Evans C, Johnson K, Partridge DG, Raza M, Baker P, Bonner S, Essex S, Liggett S, Lyons RA, Mahanama AIK, Saeed K, Samaraweera B, Silveira S, Wilson-Davies E, Emanuela P, Bayzid N, Cotic M, Ensell L, Hartley JA, Jannoo R, Karamani A, Kristiansen M, Lowe HL, Roy S, Westhorpe AP, Williams RJ, Williams CA, Jeremiah S, Prieto JA, Berry L, Grammatopoulos D, Jones K, Pandey S, Beggs A, Richter A, Ashcroft F, Best A, Crawford L, Cumley N, Mayhew M, Megram O, Mirza J, Moles-Garcia E, Percival B, Bucca G, Hesketh AR, Smith CP, Davidson RK, Balcazar CE, Gallagher MD, O?Toole Á, Rambaut A, Rooke S, Stanton TD, Williams T, Williamson KA, Bewshea CM, Farbos A, Harrison JW, Jeffries AR, Manley R, Michell SL, Michelsen ML, Sambles CM, Studholme DJ, Temperton B, Warwick-Dugdale J, Darby AC, Eccles R, Gemmell M, Gregory R, Haldenby ST, Hiscox JA, Hughes M, Iturriza-Gomara M, Jackson KA, Lucaci AO, Nelson C, Paterson S, Rainbow L, Turtle L, Vamos EE, Webster HJ, Whitehead M, Wierzbicki C, Angyal A, Brown R, de Silva TI, Freeman TM, Gallis M, Green LR, Groves DC, Keeley AJ, Lindsey BB, Louka SF, Parker MD, Parsons PJ, Smith N, Tucker RM, Wang D, Whiteley M, Wyles M, Zhang P, Alam MT, Baxter L, Bridgewater HE, Brown PE, Cheng JKJ, Constantinidou C, Frost LR, Ott S, Stark R, Taylor-Joyce G, Unnikrishnan M, Cerda AC, Merrill TV, Wilson RE, Ball J, Chappell JG, McClure PC, Tsoleridis T, Buck D, de Cesare M, Green A, MacIntyre-Cockett G, Todd JA, Trebes A, Gunson RN, Cormie C, Dias J, Forrest S, Gill HK, Higginson EE, Kermack LM, Maes M, Ruis C, Sridhar S, Young J, Howes R, McFarlane D, Dougan G, Pybus OG, Angelis DD, Maxwell PH, Peacock SJ, Weekes MP, Illingworth C, Harrison EM, Matheson NJ, Goodfellow IG, The Cambridge Covid-19 testing Centre, University of Cambridge Asymptomatic COVID-19 Screening Programme Consortium & The COVID-19 Genomics UK (COG-UK) Consortium (2022) Nature Communications 13, 751.
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.
du Plessis L, McCrone JT, Zarebski AE, Hill V, Ruis C, Gutierrez B, Raghwani J, Ashworth J, Colquhoun R, Connor TR, Faria NR, Jackson B, Loman NJ, O'Toole Á, Nicholls SM, Parag KV, Scher E, Vasylyeva TI, Volz EM, Watts A, Bogoch II, Khan K, Aanensen DM, Kraemer MUG, Rambaut A & Pybus OG (2021) Science 371, 708-712.
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7.
Meng B, Kemp SA, Papa G, Datir R, Ferreira IATM, Marelli S, Harvey WT, Lytras S, Mohamed A, Gallo G, Thakur N, Collier DA, Mlcochova P, Robson SC, Loman NJ, Connor TR, Golubchik T, Martinez Nunez RT, Ludden C, Corden S, Johnston I, Bonsall D, Smith CP, Awan AR, Bucca G, Torok ME, Saeed K, Prieto JA, Jackson DK, Hamilton WL, Snell LB, Moore C, Harrison EM, Goncalves S, Fairley DJ, Loose MW, Watkins J, Livett R, Moses S, Amato R, Nicholls S, Bull M, Smith DL, Barrett J, Aanensen DM, Curran MD, Parmar S, Aggarwal D, Shepherd JG, Parker MD, Glaysher S, Bashton M, Underwood AP, Pacchiarini N, Loveson KF, Templeton KE, Langford CF, Sillitoe J, de Silva TI, Wang D, Kwiatkowski D, Rambaut A, O'Grady J, Cottrell S, Holden MTG, Thomson EC, Osman H, Andersson M, Chauhan AJ, Hassan-Ibrahim MO, Lawniczak M, Alderton A, Chand M, Constantinidou C, Unnikrishnan M, Darby AC, Hiscox JA, Paterson S, Martincorena I, Volz EM, Page AJ, Pybus OG, Bassett AR, Ariani CV, Chapman MHS, Li KK, Shah RN, Jesudason NG, Taha Y, McHugh MP, Dewar R, Jahun AS, McMurray C, Pandey S, McKenna JP, Nelson A, Young GR, McCann CM, Elliott S, Lowe H, Temperton B, Roy S, Price A, Rey S, Wyles M, Rooke S, Shaaban S, de Cesare M, Letchford L, Silveira S, Pelosi E, Wilson-Davies E, Hosmillo M, O'Toole Á, Hesketh AR, Stark R, du Plessis L, Ruis C, Adams H, Bourgeois Y, Michell SL, Gramatopoulos D, Edgeworth J, Breuer J, Todd JA, Fraser C, Buck D, John M, Kay GL, Palmer S, Peacock SJ, Heyburn D, Weldon D, Robinson E, McNally A, Muir P, Vipond IB, Boyes J, Sivaprakasam V, Salluja T, Dervisevic S, Meader EJ, Park NR, Oliver K, Jeffries AR, Ott S, da Silva Filipe A, Simpson DA, Williams C, Masoli JAH, Knight BA, Jones CR, Koshy C, Ash A, Casey A, Bosworth A, Ratcliffe L, Xu-McCrae L, Pymont HM, Hutchings S, Berry L, Jones K, Halstead F, Davis T, Holmes C, Iturriza-Gomara M, Lucaci AO, Randell PA, Cox A, Madona P, Harris KA, Brown JR, Mahungu TW, Irish-Tavares D, Haque T, Hart J, Witele E, Fenton ML, Liggett S, Graham C, Swindells E, Collins J, Eltringham G, Campbell S, McClure PC, Clark G, Sloan TJ, Jones C, Lynch J, Warne B, Leonard S, Durham J, Williams T, Haldenby ST, Storey N, Alikhan N-F, Holmes N, Moore C, Carlile M, Perry M, Craine N, Lyons RA, Beckett AH, Goudarzi S, Fearn C, Cook K, Dent H, Paul H, Davies R, Blane B, Girgis ST, Beale MA, Bellis KL, Dorman MJ, Drury E, Kane L, Kay S, McGuigan S, Nelson R, Prestwood L, Rajatileka S, Batra R, Williams RJ, Kristiansen M, Green A, Justice A, Mahanama AIK, Samaraweera B, Hadjirin NF, Quick J, Poplawski R, Kermack LM, Reynolds N, Hall G, Chaudhry Y, Pinckert ML, Georgana I, Moll RJ, Thornton A, Myers R, Stockton J, Williams CA, Yew WC, Trotter AJ, Trebes A, MacIntyre-Cockett G, Birchley A, Adams A, Plimmer A, Gatica-Wilcox B, McKerr C, Hilvers E, Jones H, Asad H, Coombes J, Evans JM, Fina L, Gilbert L, Graham L, Cronin M, Kumziene-Summerhayes S, Taylor S, Jones S, Groves DC, Zhang P, Gallis M, Louka SF, Starinskij I, Jackson C, Gourtovaia M, Tonkin-Hill G, Lewis K, Tovar-Corona JM, James K, Baxter L, Alam MT, Orton RJ, Hughes J, Vattipally S, Ragonnet-Cronin M, Nascimento FF, Jorgensen D, Boyd O, Geidelberg L, Zarebski AE, Raghwani J, Kraemer MUG, Southgate J, Lindsey BB, Freeman TM, Keatley J-P, Singer JB, de Oliveira Martins L, Yeats CA, Abudahab K, Taylor BEW, Menegazzo M, Danesh J, Hogsden W, Eldirdiri S, Kenyon A, Mason J, Robinson TI, Holmes A, Price J, Hartley JA, Curran T, Mather AE, Shankar G, Jones R, Howe R, Morgan S, Wastenge E, Chapman MR, Mookerjee S, Stanley R, Smith W, Peto T, Eyre D, Crook D, Vernet G, Kitchen C, Gulliver H, Merrick I, Guest M, Munn R, Bradley DT, Wyatt T, Beaver C, Foulser L, Palmer S, Churcher CM, Brooks E, Smith KS, Galai K, McManus GM, Bolt F, Coll F, Meadows L, Attwood SW, Davies A, De Lacy E, Downing F, Edwards S, Scarlett GP, Jeremiah S, Smith N, Leek D, Sridhar S, Forrest S, Cormie C, Gill HK, Dias J, Higginson EE, Maes M, Young J, Wantoch M, Jamrozy D, Lo S, Patel M, Hill V, Bewshea CM, Ellard S, Auckland C, Harrison I, Bishop C, Chalker V, Richter A, Beggs A, Best A, Percival B, Mirza J, Megram O, Mayhew M, Crawford L, Ashcroft F, Moles-Garcia E, Cumley N, Hopes R, Asamaphan P, Niebel MO, Gunson RN, Bradley A, Maclean A, Mollett G, Blacow R, Bird P, Helmer T, Fallon K, Tang J, Hale AD, Macfarlane-Smith LR, Harper KL, Carden H, Machin NW, Jackson KA, Ahmad SSY, George RP, Turtle L, O'Toole E, Watts J, Breen C, Cowell A, Alcolea-Medina A, Charalampous T, Patel A, Levett LJ, Heaney J, Rowan A, Taylor GP, Shah D, Atkinson L, Lee JCD, Westhorpe AP, Jannoo R, Lowe HL, Karamani A, Ensell L, Chatterton W, Pusok M, Dadrah A, Symmonds A, Sluga G, Molnar Z, Baker P, Bonner S, Essex S, Barton E, Padgett D, Scott G, Greenaway J, Payne BAI, Burton-Fanning S, Waugh S, Raviprakash V, Sheriff N, Blakey V, Williams L-A, Moore J, Stonehouse S, Smith L, Davidson RK, Bedford L, Coupland L, Wright V, Chappell JG, Tsoleridis T, Ball J, Khakh M, Fleming VM, Lister MM, Howson-Wells HC, Berry L, Boswell T, Joseph A, Willingham I, Duckworth N, Walsh S, Wise E, Moore N, Mori M, Cortes N, Kidd S, Williams R, Gifford L, Bicknell K, Wyllie S, Lloyd A, Impey R, Malone CS, Cogger BJ, Levene N, Monaghan L, Keeley AJ, Partridge DG, Raza M, Evans C, Johnson K, Betteridge E, Farr BW, Goodwin S, Quail MA, Scott C, Shirley L, Thurston SAJ, Rajan D, Bronner IF, Aigrain L, Redshaw NM, Lensing SV, McCarthy S, Makunin A, Balcazar CE, Gallagher MD, Williamson KA, Stanton TD, Michelsen ML, Warwick-Dugdale J, Manley R, Farbos A, Harrison JW, Sambles CM, Studholme DJ, Lackenby A, Mbisa T, Platt S, Miah S, Bibby D, Manso C, Hubb J, Dabrera G, Ramsay M, Bradshaw D, Schaefer U, Groves N, Gallagher E, Lee D, Williams D, Ellaby N, Hartman H, Manesis N, Patel V, Ledesma J, Twohig KA, Allara E, Pearson C, Cheng JKJ, Bridgewater HE, Frost LR, Taylor-Joyce G, Brown PE, Tong L, Broos A, Mair D, Nichols J, Carmichael SN, Smollett KL, Nomikou K, Aranday-Cortes E, Johnson N, Nickbakhsh S, Vamos EE, Hughes M, Rainbow L, Eccles R, Nelson C, Whitehead M, Gregory R, Gemmell M, Wierzbicki C, Webster HJ, Fisher CL, Signell AW, Betancor G, Wilson HD, Nebbia G, Flaviani F, Cerda AC, Merrill TV, Wilson RE, Cotic M, Bayzid N, Thompson T, Acheson E, Rushton S, O'Brien S, Baker DJ, Rudder S, Aydin A, Sang F, Debebe J, Francois S, Vasylyeva TI, Zamudio ME, Gutierrez B, Marchbank A, Maksimovic J, Spellman K, McCluggage K, Morgan M, Beer R, Afifi S, Workman T, Fuller W, Bresner C, Angyal A, Green LR, Parsons PJ, Tucker RM, Brown R, Whiteley M, Bonfield J, Puethe C, Whitwham A, Liddle J, Rowe W, Siveroni I, Le-Viet T, Gaskin A, Johnson R, Abnizova I, Ali M, Allen L, Anderson R, Ariani C, Austin-Guest S, Bala S, Barrett J, Bassett A, Battleday K, Beal J, Beale M, Bellany S, Bellerby T, Bellis K, Berger D, Berriman M, Bevan P, Binley S, Bishop J, Blackburn K, Boughton N, Bowker S, Brendler-Spaeth T, Bronner I, Brooklyn T, Buddenborg SK, Bush R, Caetano C, Cagan A, Carter N, Cartwright J, Monteiro TC, Chapman L, Chillingworth T-J, Clapham P, Clark R, Clarke A, Clarke C, Cole D, Cook E, Coppola M, Cornell L, Cornwell C, Corton C, Crackett A, Cranage A, Craven H, Craw S, Crawford M, Cutts T, Dabrowska M, Davies M, Dawson J, Day C, Densem A, Dibling T, Dockree C, Dodd D, Dogga S, Dorman M, Dougan G, Dougherty M, Dove A, Drummond L, Dudek M, Durrant L, Easthope E, Eckert S, Ellis P, Farr B, Fenton M, Ferrero M, Flack N, Fordham H, Forsythe G, Francis M, Fraser A, Freeman A, Galvin A, Garcia-Casado M, Gedny A, Girgis S, Glover J, Gould O, Gray A, Gray E, Griffiths C, Gu Y, Guerin F, Hamilton W, Hanks H, Harrison E, Harrott A, Harry E, Harvison J, Heath P, Hernandez-Koutoucheva A, Hobbs R, Holland D, Holmes S, Hornett G, Hough N, Huckle L, Hughes-Hallet L, Hunter A, Inglis S, Iqbal S, Jackson A, Jackson D, Verdejo CJ, Jones M, Kallepally K, Kay K, Keatley J, Keith A, King A, Kitchin L, Kleanthous M, Klimekova M, Korlevic P, Krasheninnkova K, Lane G, Langford C, Laverack A, Law K, Lensing S, Lewis-Wade A, Liddle J, Lin Q, Lindsay S, Linsdell S, Long R, Lovell J, Lovell J, Mack J, Maddison M, Makunin A, Mamun I, Mansfield J, Marriott N, Martin M, Mayho M, McClintock J, McHugh S, MapcMinn L, Meadows C, Mobley E, Moll R, Morra M, Morrow L, Murie K, Nash S, Nathwani C, Naydenova P, Neaverson A, Nerou E, Nicholson J, Nimz T, Noell GG, O'Meara S, Ohan V, Olney C, Ormond D, Oszlanczi A, Pang YF, Pardubska B, Park N, Parmar A, Patel G, Payne M, Peacock S, Petersen A, Plowman D, Preston T, Quail M, Rance R, Rawlings S, Redshaw N, Reynolds J, Reynolds M, Rice S, Richardson M, Roberts C, Robinson K, Robinson M, Robinson D, Rogers H, Rojo EM, Roopra D, Rose M, Rudd L, Sadri R, Salmon N, Saul D, Schwach F, Seekings P, Simms A, Sinnott M, Sivadasan S, Siwek B, Sizer D, Skeldon K, Skelton J, Slater-Tunstill J, Sloper L, Smerdon N, Smith C, Smith C, Smith J, Smith K, Smith M, Smith S, Smith T, Sneade L, Soria CD, Sousa C, Souster E, Sparkes A, Spencer-Chapman M, Squares J, Stanley R, Steed C, Stickland T, Still I, Stratton M, Strickland M, Swann A, Swiatkowska A, Sycamore N, Swift E, Symons E, Szluha S, Taluy E, Tao N, Taylor K, Taylor S, Thompson S, Thompson M, Thomson M, Thomson N, Thurston S, Toombs D, Topping B, Tovar-Corona J, Ungureanu D, Uphill J, Urbanova J, Van PJ, Vancollie V, Voak P, Walker D, Walker M, Waller M, Ward G, Weatherhogg C, Webb N, Wells A, Wells E, Westwood L, Whipp T, Whiteley T, Whitton G, Widaa S, Williams M, Wilson M, Wright S, Duncan LM, Carabelli AM, Kenyon JC, Lever AM, De Marco A, Saliba C, Culap K, Cameroni E, Matheson NJ, Piccoli L, Corti D, James LC, Robertson DL, Bailey D, Gupta RK & The COVID-19 Genomics UK (COG-UK) Consortium (2021) Cell Reports 35, 109292.
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England.
Volz E, Mishra S, Chand M, Barrett JC, Johnson R, Geidelberg L, Hinsley WR, Laydon DJ, Dabrera G, O?Toole Á, Amato R, Ragonnet-Cronin M, Harrison I, Jackson B, Ariani CV, Boyd O, Loman NJ, McCrone JT, Gonçalves S, Jorgensen D, Myers R, Hill V, Jackson DK, Gaythorpe K, Groves N, Sillitoe J, Kwiatkowski DP, Koshy C, Ash A, Wise E, Moore N, Mori M, Cortes N, Lynch J, Kidd S, Fairley DJ, Curran T, McKenna JP, Adams H, Fraser C, Golubchik T, Bonsall D, Hassan-Ibrahim MO, Malone CS, Cogger BJ, Wantoch M, Reynolds N, Warne B, Maksimovic J, Spellman K, McCluggage K, John M, Beer R, Afifi S, Morgan S, Marchbank A, Price A, Kitchen C, Gulliver H, Merrick I, Southgate J, Guest M, Munn R, Workman T, Connor TR, Fuller W, Bresner C, Snell LB, Patel A, Charalampous T, Nebbia G, Batra R, Edgeworth J, Robson SC, Beckett AH, Aanensen DM, Underwood AP, Yeats CA, Abudahab K, Taylor BEW, Menegazzo M, Clark G, Smith W, Khakh M, Fleming VM, Lister MM, Howson-Wells HC, Berry L, Boswell T, Joseph A, Willingham I, Jones C, Holmes C, Bird P, Helmer T, Fallon K, Tang J, Raviprakash V, Campbell S, Sheriff N, Blakey V, Williams L-A, Loose MW, Holmes N, Moore C, Carlile M, Wright V, Sang F, Debebe J, Coll F, Signell AW, Betancor G, Wilson HD, Eldirdiri S, Kenyon A, Davis T, Pybus OG, du Plessis L, Zarebski AE, Raghwani J, Kraemer MUG, Francois S, Attwood SW, Vasylyeva TI, Zamudio ME, Gutierrez B, Torok ME, Hamilton WL, Goodfellow IG, Hall G, Jahun AS, Chaudhry Y, Hosmillo M, Pinckert ML, Georgana I, Moses S, Lowe H, Bedford L, Moore J, Stonehouse S, Fisher CL, Awan AR, BoYes J, Breuer J, Harris KA, Brown JR, Shah D, Atkinson L, Lee JCD, Storey N, Flaviani F, Alcolea-Medina A, Williams R, Vernet G, Chapman MR, Levett LJ, Heaney J, Chatterton W, Pusok M, Xu-McCrae L, Smith DL, Bashton M, Young GR, Holmes A, Randell PA, Cox A, Madona P, Bolt F, Price J, Mookerjee S, Ragonnet-Cronin M, Nascimento FF, Jorgensen D, Siveroni I, Johnson R, Boyd O, Geidelberg L, Volz EM, Rowan A, Taylor GP, Smollett KL, 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Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.
Lu J, du Plessis L, Liu Z, Hill V, Kang M, Lin H, Sun J, François S, Kraemer MUG, Faria NR, McCrone JT, Peng J, Xiong Q, Yuan R, Zeng L, Zhou P, Liang C, Yi L, Liu J, Xiao J, Hu J, Liu T, Ma W, Li W, Su J, Zheng H, Peng B, Fang S, Su W, Li K, Sun R, Bai R, Tang X, Liang M, Quick J, Song T, Rambaut A, Loman N, Raghwani J, Pybus OG & Ke C (2020) Cell 181, 997-1003.
Genome-wide evolutionary dynamics of influenza B viruses on a global scale.
Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels RS, Russell CA, Pybus OG, McCauley J, Kellam P & Watson SJ (2017) PLoS pathogens 13, e1006749.
The origin and evolution of the unique HCV circulating recombinant form 2k/1b.
Raghwani J, Thomas XV, Koekkoek SM, Schinkel J, Molenkamp R, van de Laar TJ, Takebe Y, Tanaka Y, Mizokami M, Rambaut A & Pybus OG (2012) J Virol 86, 2212-2220.
Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission.
Raghwani J, Rambaut A, Holmes EC, Vu Ty Hang, Tran Tinh Hien, Farrar J, Wills B, Lennon NJ, Birren BW, Henn MR & Simmons CP (2011) PLoS Pathog 7, e1002064.
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.
Smith GJD, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JSM, Guan Y & Rambaut A (2009) Nature 459, 1122-1125.
 
Andrew Rambaut, 2007