This site is for the research, software and publications of Andrew Rambaut and members of his research group.
News
The BEAST software package has its own website: http://beast.bio.ed.ac.uk
Dicussion forum for virus evolution and epidemiology: http://virological.org
Recent publications
- Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.
- du Plessis L, McCrone JT, Zarebski AE, et al. (2021) Science 371, 708-712.
- Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.
- Volz E, Hill V, McCrone JT, et al. (2021) Cell 184, 64-75.
- Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England.
- Volz E, Mishra S, Chand M, et al. (2021) Nature
- The proximal origin of SARS-CoV-2.
- Andersen KG, Rambaut A, Lipkin WI, et al. (2020) Nature Medicine
- Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2.
- Lemey P, Hong SL, Hill V, et al. (2020) Nature Communications 11, 5110.
- Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic.
- Boni MF, Lemey P, Jiang X, et al. (2020) Nature Microbiology 5, 1408-1417.
- A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.
- Rambaut A, Holmes EC, O'Toole Á, et al. (2020) Nature Microbiology 5, 1403-1407.
- The emergence of SARS-CoV-2 in Europe and North America.
- Worobey M, Pekar J, Larsen BB, et al. (2020) Science 370, 564-570.
- Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.
- Dudas G, Carvalho LM, Bedford T, et al. (2017) Nature 2017/04/12/online
- Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic.
- Diehl WE, Lin AE, Grubaugh ND, et al. (2016) Cell 167, 1088-1098.
Latest software
- 2019-06-13 - TempEst
- Explore temporal signal and clocklikeness in trees (formerly Path-O-Gen)
- 2018-11-25 - FigTree
- Produce high-quality figures of phylogenetic trees
- 2018-08-01 - BEAST
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences.
- 2018-05-01 - Tracer
- A program for analysing results from Bayesian MCMC programs such as BEAST & MrBayes
- 2017-09-17 - Seq-Gen
- An application for the Monte Carlo simulation of DNA and amino acid sequence evolution along phyloge(...)
- 2008-11-29 - TreeStat
- A program that calculates summary statistics of a set of trees
- 2002-12-01 - Phylogen
- 2002-10-04 - TreeEdit
