Verity Hill

Research Interests

Publications

Total publications: 19
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission.
Aggarwal D, Warne B, Jahun AS, Hamilton WL, Fieldman T, du Plessis L, Hill V, Blane B, Watkins E, Wright E, Hall G, Ludden C, Myers R, Hosmillo M, Chaudhry Y, Pinckert ML, Georgana I, Izuagbe R, Leek D, Nsonwu O, Hughes GJ, Packer S, Page AJ, Metaxaki M, Fuller S, Weale G, Holgate J, Brown CA, Orton A, Douthwaite J, Rees S, Brown C, Clark R, Jones DR, Kuenzi F, Rankin J, Waddell I, Maxwell P, Matheson N, Abell C, Braithwaite V, Brierley C, Crowcroft J, Dahal A, Faulkner K, Glover M, Goodfellow I, Greatorex J, James L, Lehner P, Leslie I, Liddell K, Margolis B, Morgan S, Sheridan L, Valletta S, Vignoles A, Vinnell M, Wills M, Hilborne S, Berry S, Kahkeshi MB, Hancock D, Winster J, Enright J, Samworth R, Samtani V, Ahmadi-Assalemi G, Feather T, Goodall R, Hoensch S, Johnson D, Hunt M, Mathieson N, Nikitina K, Sheldrake Z, Keen M, Sato A, Connor D, Tolhurst J, Williman J, Hollamby V, Jordan S, Fatseas T, Taylor P, Georgiou C, Caspersz M, McNulty C, Davies R, Clarke R, Danaei D, Dyer R, Glew R, Lambson O, Gibbs K, Mozdzen B, Raub G, Radecki A, White P, Hughes R, Gransden L, Ceaser M, Sing R, Wilson K, Parlikad A, Dhada M, Ridgman T, Mungovan D, Matthews S, Searle P, Mills J, Neely A, Henderson R, Murphy E, Russell M, Freeling A, Poppitt S, Tynan J, Knapton J, Marchetti F, Angelis DD, Feltwell T, Hadjirin NF, Hamilton WL, Jahun A, Pinckert M, Shaw A, Chaudhry A, Brown NM, Mactavous L, Hannan S, Hosaja A, Leong C, Wright J, Quinnell N, Workman C, Ferris M, Wright G, Wright E, Aggarwal D, Brooks E, Carabelli AM, Churcher CM, Galai K, Girgis ST, Gupta RK, Ludden C, McManus GM, Palmer S, Peacock SJ, Smith KS, Allara E, Bibby D, Bishop C, Bosworth A, Bradshaw D, Chalker V, Chand M, Dabrera G, Ellaby N, Gallagher E, Groves N, Harrison I, Hartman H, Hopes R, Hubb J, Hutchings S, Lackenby A, Ledesma J, Lee D, Manesis N, Manso C, Mbisa T, Miah S, Muir P, Osman H, Patel V, Pearson C, Platt S, Pymont HM, Ramsay M, Robinson E, Schaefer U, Thornton A, Twohig KA, Vipond IB, Williams D, Hamilton WL, Aigrain L, Alderton A, Amato R, Ariani CV, Barrett J, Bassett AR, Beale MA, Beaver C, Bellis KL, Betteridge E, Bonfield J, Bronner IF, Chapman MHS, Danesh J, Davies R, Dorman MJ, Drury E, Durham J, Farr BW, Foulser L, Goncalves S, Goodwin S, Gourtovaia M, Jackson DK, James K, Jamrozy D, Johnston I, Kane L, Kay S, Keatley J-P, Kwiatkowski D, Langford CF, Lawniczak M, Lensing SV, Leonard S, Letchford L, Lewis K, Liddle J, Livett R, Lo S, Makunin A, Martincorena I, McCarthy S, McGuigan S, Moll RJ, Nelson R, Oliver K, Palmer S, Park NR, Patel M, Prestwood L, Puethe C, Quail MA, Rajan D, Rajatileka S, Redshaw NM, Scott C, Shirley L, Sillitoe J, Thurston SAJ, Tonkin-Hill G, Tovar-Corona JM, Weldon D, Whitwham A, Hosmillo M, Attwood SW, du Plessis L, Zamudio ME, Francois S, Gutierrez B, Kraemer MUG, Raghwani J, Vasylyeva TI, Zarebski AE, Alikhan N-F, Aydin A, Baker DJ, de Oliveira Martins L, Kay GL, Le-Viet T, Mather AE, Meadows L, O?Grady J, Rudder S, Trotter AJ, Illingworth CJ, Jackson C, Aranday-Cortes E, Asamaphan P, Broos A, Carmichael SN, da Silva Filipe A, Hughes J, Jesudason NG, Johnson N, Li KK, Mair D, Nichols J, Nickbakhsh S, Niebel MO, Nomikou K, Orton RJ, Robertson DL, Shah RN, Shepherd JG, Singer JB, Starinskij I, Thomson EC, Tong L, Vattipally S, Ash A, Koshy C, Cortes N, Kidd S, Lynch J, Moore N, Mori M, Wise E, Curran T, Fairley DJ, McKenna JP, Adams H, Bonsall D, Fraser C, Golubchik T, Cogger BJ, Hassan-Ibrahim MO, Malone CS, Reynolds N, Wantoch M, Afifi S, Beer R, John M, Maksimovic J, McCluggage K, Morgan S, Spellman K, Bresner C, Connor TR, Fuller W, Guest M, Gulliver H, Kitchen C, Marchbank A, Merrick I, Munn R, Price A, Southgate J, Workman T, Patel A, Snell LB, Batra R, Charalampous T, Edgeworth J, Nebbia G, Beckett AH, Robson SC, Aanensen DM, Abudahab K, Menegazzo M, Taylor BEW, Underwood AP, Yeats CA, Berry L, Boswell T, Clark G, Fleming VM, Howson-Wells HC, Jones C, Joseph A, Khakh M, Lister MM, Smith W, Willingham I, Bird P, Fallon K, Helmer T, Holmes C, Tang J, Blakey V, Campbell S, Raviprakash V, Sheriff N, Williams L-A, Carlile M, Debebe J, Holmes N, Loose MW, Moore C, Sang F, Wright V, Coll F, Betancor G, Signell AW, Wilson HD, Davis T, Eldirdiri S, Kenyon A, Torok ME, Lowe H, Moses S, Bedford L, Moore J, Stonehouse S, Awan AR, Fisher CL, BoYes J, Atkinson L, Breuer J, Brown JR, Harris KA, Lee JCD, Shah D, Storey N, Flaviani F, Alcolea-Medina A, Vernet G, Williams R, Chapman MR, Chatterton W, Heaney J, Levett LJ, Pusok M, Xu-McCrae L, Bashton M, Smith DL, Young GR, Bolt F, Cox A, Holmes A, Madona P, Mookerjee S, Price J, Randell PA, Boyd O, Nascimento FF, Geidelberg L, Johnson R, Jorgensen D, Ragonnet-Cronin M, Rowan A, Siveroni I, Taylor GP, Volz EM, Smollett KL, Loman NJ, McMurray C, McNally A, Nicholls S, Poplawski R, Quick J, Rowe W, Stockton J, Nunez RTM, Breen C, Cowell A, Mason J, O?Toole E, Robinson TI, Watts J, Sluga G, Ahmad SSY, George RP, Machin NW, Halstead F, Hogsden W, Sivaprakasam V, Carden H, Hale AD, Harper KL, Macfarlane-Smith LR, Burton-Fanning S, Collins J, Eltringham G, Payne BA, Taha Y, Waugh S, O?Brien S, Rushton S, Blacow R, Bradley A, Maclean A, Mollett G, Dewar R, McHugh MP, Templeton KE, Wastenge E, Coupland L, Dervisevic S, Meader EJ, Stanley R, Smith L, Barton E, Graham C, Padgett D, Scott G, Greenaway J, Swindells E, McCann CM, Nelson A, Yew WC, Andersson M, Crook D, Eyre D, Justice A, Peto T, Duckworth N, Sloan TJ, Walsh S, Bicknell K, Chauhan AJ, Elliott S, Glaysher S, Impey R, Lloyd A, Wyllie S, Levene N, Monaghan L, Bradley DT, Wyatt T, Curran MD, Parmar S, Holden MTG, Shaaban S, Adams A, Asad H, Birchley A, Bull M, Coombes J, Corden S, Cottrell S, Craine N, Cronin M, Davies A, Lacy ED, Downing F, Edwards S, Evans JM, Fina L, Gaskin A, Gatica-Wilcox B, Gifford L, Gilbert L, Graham L, Heyburn D, Hilvers E, Howe R, Jones H, Jones R, Jones S, Kumziene-SummerhaYes S, McKerr C, Moore C, Morgan M, Pacchiarini N, Perry M, Plimmer A, Rey S, Shankar G, Taylor S, Watkins J, Williams C, Casey A, Ratcliffe L, Acheson E, Molnar Z, Simpson DA, Thompson T, Auckland C, Ellard S, Jones CR, Knight BA, Masoli JAH, Haque T, Hart J, Irish-Tavares D, Mahungu TW, Witele E, Dadrah A, Fenton ML, Saluja T, Symmonds A, Bourgeois Y, Scarlett GP, Cook K, Dent H, Fearn C, Goudarzi S, Loveson KF, Paul H, Evans C, Johnson K, Partridge DG, Raza M, Baker P, Bonner S, Essex S, Liggett S, Lyons RA, Mahanama AIK, Saeed K, Samaraweera B, Silveira S, Wilson-Davies E, Emanuela P, Bayzid N, Cotic M, Ensell L, Hartley JA, Jannoo R, Karamani A, Kristiansen M, Lowe HL, Roy S, Westhorpe AP, Williams RJ, Williams CA, Jeremiah S, Prieto JA, Berry L, Grammatopoulos D, Jones K, Pandey S, Beggs A, Richter A, Ashcroft F, Best A, Crawford L, Cumley N, Mayhew M, Megram O, Mirza J, Moles-Garcia E, Percival B, Bucca G, Hesketh AR, Smith CP, Davidson RK, Balcazar CE, Gallagher MD, O?Toole Á, Rambaut A, Rooke S, Stanton TD, Williams T, Williamson KA, Bewshea CM, Farbos A, Harrison JW, Jeffries AR, Manley R, Michell SL, Michelsen ML, Sambles CM, Studholme DJ, Temperton B, Warwick-Dugdale J, Darby AC, Eccles R, Gemmell M, Gregory R, Haldenby ST, Hiscox JA, Hughes M, Iturriza-Gomara M, Jackson KA, Lucaci AO, Nelson C, Paterson S, Rainbow L, Turtle L, Vamos EE, Webster HJ, Whitehead M, Wierzbicki C, Angyal A, Brown R, de Silva TI, Freeman TM, Gallis M, Green LR, Groves DC, Keeley AJ, Lindsey BB, Louka SF, Parker MD, Parsons PJ, Smith N, Tucker RM, Wang D, Whiteley M, Wyles M, Zhang P, Alam MT, Baxter L, Bridgewater HE, Brown PE, Cheng JKJ, Constantinidou C, Frost LR, Ott S, Stark R, Taylor-Joyce G, Unnikrishnan M, Cerda AC, Merrill TV, Wilson RE, Ball J, Chappell JG, McClure PC, Tsoleridis T, Buck D, de Cesare M, Green A, MacIntyre-Cockett G, Todd JA, Trebes A, Gunson RN, Cormie C, Dias J, Forrest S, Gill HK, Higginson EE, Kermack LM, Maes M, Ruis C, Sridhar S, Young J, Howes R, McFarlane D, Dougan G, Pybus OG, Angelis DD, Maxwell PH, Peacock SJ, Weekes MP, Illingworth C, Harrison EM, Matheson NJ, Goodfellow IG, The Cambridge Covid-19 testing Centre, University of Cambridge Asymptomatic COVID-19 Screening Programme Consortium & The COVID-19 Genomics UK (COG-UK) Consortium (2022) Nature Communications 13, 751.
Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination.
Campbell K, Gifford RJ, Singer J, Hill V, O'Toole Á, Rambaut A, Hampson K & Brunker K (2022) PLoS Pathogens 18, e1010023.
Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.
Rambaut A, Holmes EC, O'Toole Á, Hill V, McCrone JT, Ruis C, du Plessis L & Pybus OG (2021) Nature microbiology 6, 415.
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.
du Plessis L, McCrone JT, Zarebski AE, Hill V, Ruis C, Gutierrez B, Raghwani J, Ashworth J, Colquhoun R, Connor TR, Faria NR, Jackson B, Loman NJ, O'Toole Á, Nicholls SM, Parag KV, Scher E, Vasylyeva TI, Volz EM, Watts A, Bogoch II, Khan K, Aanensen DM, Kraemer MUG, Rambaut A & Pybus OG (2021) Science 371, 708-712.
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.
Volz E, Hill V, McCrone JT, Price A, Jorgensen D, O'Toole Á, Southgate J, Johnson R, Jackson B, Nascimento FF, Rey SM, Nicholls SM, Colquhoun RM, da Silva Filipe A, Shepherd J, Pascall DJ, Shah R, Jesudason N, Li K, Jarrett R, Pacchiarini N, Bull M, Geidelberg L, Siveroni I, COG-UK Consortium, Goodfellow I, Loman NJ, Pybus OG, Robertson DL, Thomson EC, Rambaut A & Connor TR (2021) Cell 184, 64-75.
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England.
Volz E, Mishra S, Chand M, Barrett JC, Johnson R, Geidelberg L, Hinsley WR, Laydon DJ, Dabrera G, O'Toole Á, Amato R, Ragonnet-Cronin M, Harrison I, Jackson B, Ariani CV, Boyd O, Loman NJ, McCrone JT, Gon?alves S, Jorgensen D, Myers R, Hill V, Jackson DK, Gaythorpe K, Groves N, Sillitoe J, Kwiatkowski DP, Flaxman S, Ratmann O, Bhatt S, Hopkins S, Gandy A, Rambaut A, Ferguson NM & The COVID-19 Genomics UK (COG-UK) consortium (2021) Nature
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.
da Silva Filipe A, Shepherd JG, Williams T, Hughes J, Aranday-Cortes E, Asamaphan P, Ashraf S, Balcazar C, Brunker K, Campbell A, Carmichael S, Davis C, Dewar R, Gallagher MD, Gunson R, Hill V, Ho A, Jackson B, James E, Jesudason N, Johnson N, McWilliam Leitch EC, Li K, MacLean A, Mair D, McAllister DA, McCrone JT, McDonald SE, McHugh MP, Morris AK, Nichols J, Niebel M, Nomikou K, Orton RJ, O'Toole Á, Palmarini M, Parcell BJ, Parr YA, Rambaut A, Rooke S, Shaaban S, Shah R, Singer JB, Smollett K, Starinskij I, Tong L, Sreenu VB, Wastnedge E, Holden MTG, Robertson DL, Templeton K, Thomson EC & The COVID-19 Genomics UK (COG-UK) Consortium (2021) Nature Microbiology 6, 112-122.
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Nicholls SM, Poplawski R, Bull MJ, Underwood A, Chapman M, Abu-Dahab K, Taylor B, Colquhoun RM, Rowe WPM, Jackson B, Hill V, O'Toole Á, Rey S, Southgate J, Amato R, Livett R, Gonçalves S, Harrison EM, Peacock SJ, Aanensen DM, Rambaut A, Connor TR, Loman NJ & The COVID-19 Genomics UK (COG-UK) Consortium (2021) Genome Biology 22, 196.
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7.
Meng B, Kemp SA, Papa G, Datir R, Ferreira IATM, Marelli S, Harvey WT, Lytras S, Mohamed A, Gallo G, Thakur N, Collier DA, Mlcochova P, Robson SC, Loman NJ, Connor TR, Golubchik T, Martinez Nunez RT, Ludden C, Corden S, Johnston I, Bonsall D, Smith CP, Awan AR, Bucca G, Torok ME, Saeed K, Prieto JA, Jackson DK, Hamilton WL, Snell LB, Moore C, Harrison EM, Goncalves S, Fairley DJ, Loose MW, Watkins J, Livett R, Moses S, Amato R, Nicholls S, Bull M, Smith DL, Barrett J, Aanensen DM, Curran MD, Parmar S, Aggarwal D, Shepherd JG, Parker MD, Glaysher S, Bashton M, Underwood AP, Pacchiarini N, Loveson KF, Templeton KE, Langford CF, Sillitoe J, de Silva TI, Wang D, Kwiatkowski D, Rambaut A, O'Grady J, Cottrell S, Holden MTG, Thomson EC, Osman H, Andersson M, Chauhan AJ, Hassan-Ibrahim MO, Lawniczak M, Alderton A, Chand M, Constantinidou C, Unnikrishnan M, Darby AC, Hiscox JA, Paterson S, Martincorena I, Volz EM, Page AJ, Pybus OG, Bassett AR, Ariani CV, Chapman MHS, Li KK, Shah RN, Jesudason NG, Taha Y, McHugh MP, Dewar R, Jahun AS, McMurray C, Pandey S, McKenna JP, Nelson A, Young GR, McCann CM, Elliott S, Lowe H, Temperton B, Roy S, Price A, Rey S, Wyles M, Rooke S, Shaaban S, de Cesare M, Letchford L, Silveira S, Pelosi E, Wilson-Davies E, Hosmillo M, O'Toole Á, Hesketh AR, Stark R, du Plessis L, Ruis C, Adams H, Bourgeois Y, Michell SL, Gramatopoulos D, Edgeworth J, Breuer J, Todd JA, Fraser C, Buck D, John M, Kay GL, Palmer S, Peacock SJ, Heyburn D, Weldon D, Robinson E, McNally A, Muir P, Vipond IB, Boyes J, Sivaprakasam V, Salluja T, Dervisevic S, Meader EJ, Park NR, Oliver K, Jeffries AR, Ott S, da Silva Filipe A, Simpson DA, Williams C, Masoli JAH, Knight BA, Jones CR, Koshy C, Ash A, Casey A, Bosworth A, Ratcliffe L, Xu-McCrae L, Pymont HM, Hutchings S, Berry L, Jones K, Halstead F, Davis T, Holmes C, Iturriza-Gomara M, Lucaci AO, Randell PA, Cox A, Madona P, Harris KA, Brown JR, Mahungu TW, Irish-Tavares D, Haque T, Hart J, Witele E, Fenton ML, Liggett S, Graham C, Swindells E, Collins J, Eltringham G, Campbell S, McClure PC, Clark G, Sloan TJ, Jones C, Lynch J, Warne B, Leonard S, Durham J, Williams T, Haldenby ST, Storey N, Alikhan N-F, Holmes N, Moore C, Carlile M, Perry M, Craine N, Lyons RA, Beckett AH, Goudarzi S, Fearn C, Cook K, Dent H, Paul H, Davies R, Blane B, Girgis ST, Beale MA, Bellis KL, Dorman MJ, Drury E, Kane L, Kay S, McGuigan S, Nelson R, Prestwood L, Rajatileka S, Batra R, Williams RJ, Kristiansen M, Green A, Justice A, Mahanama AIK, Samaraweera B, Hadjirin NF, Quick J, Poplawski R, Kermack LM, Reynolds N, Hall G, Chaudhry Y, Pinckert ML, Georgana I, Moll RJ, Thornton A, Myers R, Stockton J, Williams CA, Yew WC, Trotter AJ, Trebes A, MacIntyre-Cockett G, Birchley A, Adams A, Plimmer A, Gatica-Wilcox B, McKerr C, Hilvers E, Jones H, Asad H, Coombes J, Evans JM, Fina L, Gilbert L, Graham L, Cronin M, Kumziene-Summerhayes S, Taylor S, Jones S, Groves DC, Zhang P, Gallis M, Louka SF, Starinskij I, Jackson C, Gourtovaia M, Tonkin-Hill G, Lewis K, Tovar-Corona JM, James K, Baxter L, Alam MT, Orton RJ, Hughes J, Vattipally S, Ragonnet-Cronin M, Nascimento FF, Jorgensen D, Boyd O, Geidelberg L, Zarebski AE, Raghwani J, Kraemer MUG, Southgate J, Lindsey BB, Freeman TM, Keatley J-P, Singer JB, de Oliveira Martins L, Yeats CA, Abudahab K, Taylor BEW, Menegazzo M, Danesh J, Hogsden W, Eldirdiri S, Kenyon A, Mason J, Robinson TI, Holmes A, Price J, Hartley JA, Curran T, Mather AE, Shankar G, Jones R, Howe R, Morgan S, Wastenge E, Chapman MR, Mookerjee S, Stanley R, Smith W, Peto T, Eyre D, Crook D, Vernet G, Kitchen C, Gulliver H, Merrick I, Guest M, Munn R, Bradley DT, Wyatt T, Beaver C, Foulser L, Palmer S, Churcher CM, Brooks E, Smith KS, Galai K, McManus GM, Bolt F, Coll F, Meadows L, Attwood SW, Davies A, De Lacy E, Downing F, Edwards S, Scarlett GP, Jeremiah S, Smith N, Leek D, Sridhar S, Forrest S, Cormie C, Gill HK, Dias J, Higginson EE, Maes M, Young J, Wantoch M, Jamrozy D, Lo S, Patel M, Hill V, Bewshea CM, Ellard S, Auckland C, Harrison I, Bishop C, Chalker V, Richter A, Beggs A, Best A, Percival B, Mirza J, Megram O, Mayhew M, Crawford L, Ashcroft F, Moles-Garcia E, Cumley N, Hopes R, Asamaphan P, Niebel MO, Gunson RN, Bradley A, Maclean A, Mollett G, Blacow R, Bird P, Helmer T, Fallon K, Tang J, Hale AD, Macfarlane-Smith LR, Harper KL, Carden H, Machin NW, Jackson KA, Ahmad SSY, George RP, Turtle L, O'Toole E, Watts J, Breen C, Cowell A, Alcolea-Medina A, Charalampous T, Patel A, Levett LJ, Heaney J, Rowan A, Taylor GP, Shah D, Atkinson L, Lee JCD, Westhorpe AP, Jannoo R, Lowe HL, Karamani A, Ensell L, Chatterton W, Pusok M, Dadrah A, Symmonds A, Sluga G, Molnar Z, Baker P, Bonner S, Essex S, Barton E, Padgett D, Scott G, Greenaway J, Payne BAI, Burton-Fanning S, Waugh S, Raviprakash V, Sheriff N, Blakey V, Williams L-A, Moore J, Stonehouse S, Smith L, Davidson RK, Bedford L, Coupland L, Wright V, Chappell JG, Tsoleridis T, Ball J, Khakh M, Fleming VM, Lister MM, Howson-Wells HC, Berry L, Boswell T, Joseph A, Willingham I, Duckworth N, Walsh S, Wise E, Moore N, Mori M, Cortes N, Kidd S, Williams R, Gifford L, Bicknell K, Wyllie S, Lloyd A, Impey R, Malone CS, Cogger BJ, Levene N, Monaghan L, Keeley AJ, Partridge DG, Raza M, Evans C, Johnson K, Betteridge E, Farr BW, Goodwin S, Quail MA, Scott C, Shirley L, Thurston SAJ, Rajan D, Bronner IF, Aigrain L, Redshaw NM, Lensing SV, McCarthy S, Makunin A, Balcazar CE, Gallagher MD, Williamson KA, Stanton TD, Michelsen ML, Warwick-Dugdale J, Manley R, Farbos A, Harrison JW, Sambles CM, Studholme DJ, Lackenby A, Mbisa T, Platt S, Miah S, Bibby D, Manso C, Hubb J, Dabrera G, Ramsay M, Bradshaw D, Schaefer U, Groves N, Gallagher E, Lee D, Williams D, Ellaby N, Hartman H, Manesis N, Patel V, Ledesma J, Twohig KA, Allara E, Pearson C, Cheng JKJ, Bridgewater HE, Frost LR, Taylor-Joyce G, Brown PE, Tong L, Broos A, Mair D, Nichols J, Carmichael SN, Smollett KL, Nomikou K, Aranday-Cortes E, Johnson N, Nickbakhsh S, Vamos EE, Hughes M, Rainbow L, Eccles R, Nelson C, Whitehead M, Gregory R, Gemmell M, Wierzbicki C, Webster HJ, Fisher CL, Signell AW, Betancor G, Wilson HD, Nebbia G, Flaviani F, Cerda AC, Merrill TV, Wilson RE, Cotic M, Bayzid N, Thompson T, Acheson E, Rushton S, O'Brien S, Baker DJ, Rudder S, Aydin A, Sang F, Debebe J, Francois S, Vasylyeva TI, Zamudio ME, Gutierrez B, Marchbank A, Maksimovic J, Spellman K, McCluggage K, Morgan M, Beer R, Afifi S, Workman T, Fuller W, Bresner C, Angyal A, Green LR, Parsons PJ, Tucker RM, Brown R, Whiteley M, Bonfield J, Puethe C, Whitwham A, Liddle J, Rowe W, Siveroni I, Le-Viet T, Gaskin A, Johnson R, Abnizova I, Ali M, Allen L, Anderson R, Ariani C, Austin-Guest S, Bala S, Barrett J, Bassett A, Battleday K, Beal J, Beale M, Bellany S, Bellerby T, Bellis K, Berger D, Berriman M, Bevan P, Binley S, Bishop J, Blackburn K, Boughton N, Bowker S, Brendler-Spaeth T, Bronner I, Brooklyn T, Buddenborg SK, Bush R, Caetano C, Cagan A, Carter N, Cartwright J, Monteiro TC, Chapman L, Chillingworth T-J, Clapham P, Clark R, Clarke A, Clarke C, Cole D, Cook E, Coppola M, Cornell L, Cornwell C, Corton C, Crackett A, Cranage A, Craven H, Craw S, Crawford M, Cutts T, Dabrowska M, Davies M, Dawson J, Day C, Densem A, Dibling T, Dockree C, Dodd D, Dogga S, Dorman M, Dougan G, Dougherty M, Dove A, Drummond L, Dudek M, Durrant L, Easthope E, Eckert S, Ellis P, Farr B, Fenton M, Ferrero M, Flack N, Fordham H, Forsythe G, Francis M, Fraser A, Freeman A, Galvin A, Garcia-Casado M, Gedny A, Girgis S, Glover J, Gould O, Gray A, Gray E, Griffiths C, Gu Y, Guerin F, Hamilton W, Hanks H, Harrison E, Harrott A, Harry E, Harvison J, Heath P, Hernandez-Koutoucheva A, Hobbs R, Holland D, Holmes S, Hornett G, Hough N, Huckle L, Hughes-Hallet L, Hunter A, Inglis S, Iqbal S, Jackson A, Jackson D, Verdejo CJ, Jones M, Kallepally K, Kay K, Keatley J, Keith A, King A, Kitchin L, Kleanthous M, Klimekova M, Korlevic P, Krasheninnkova K, Lane G, Langford C, Laverack A, Law K, Lensing S, Lewis-Wade A, Liddle J, Lin Q, Lindsay S, Linsdell S, Long R, Lovell J, Lovell J, Mack J, Maddison M, Makunin A, Mamun I, Mansfield J, Marriott N, Martin M, Mayho M, McClintock J, McHugh S, MapcMinn L, Meadows C, Mobley E, Moll R, Morra M, Morrow L, Murie K, Nash S, Nathwani C, Naydenova P, Neaverson A, Nerou E, Nicholson J, Nimz T, Noell GG, O'Meara S, Ohan V, Olney C, Ormond D, Oszlanczi A, Pang YF, Pardubska B, Park N, Parmar A, Patel G, Payne M, Peacock S, Petersen A, Plowman D, Preston T, Quail M, Rance R, Rawlings S, Redshaw N, Reynolds J, Reynolds M, Rice S, Richardson M, Roberts C, Robinson K, Robinson M, Robinson D, Rogers H, Rojo EM, Roopra D, Rose M, Rudd L, Sadri R, Salmon N, Saul D, Schwach F, Seekings P, Simms A, Sinnott M, Sivadasan S, Siwek B, Sizer D, Skeldon K, Skelton J, Slater-Tunstill J, Sloper L, Smerdon N, Smith C, Smith C, Smith J, Smith K, Smith M, Smith S, Smith T, Sneade L, Soria CD, Sousa C, Souster E, Sparkes A, Spencer-Chapman M, Squares J, Stanley R, Steed C, Stickland T, Still I, Stratton M, Strickland M, Swann A, Swiatkowska A, Sycamore N, Swift E, Symons E, Szluha S, Taluy E, Tao N, Taylor K, Taylor S, Thompson S, Thompson M, Thomson M, Thomson N, Thurston S, Toombs D, Topping B, Tovar-Corona J, Ungureanu D, Uphill J, Urbanova J, Van PJ, Vancollie V, Voak P, Walker D, Walker M, Waller M, Ward G, Weatherhogg C, Webb N, Wells A, Wells E, Westwood L, Whipp T, Whiteley T, Whitton G, Widaa S, Williams M, Wilson M, Wright S, Duncan LM, Carabelli AM, Kenyon JC, Lever AM, De Marco A, Saliba C, Culap K, Cameroni E, Matheson NJ, Piccoli L, Corti D, James LC, Robertson DL, Bailey D, Gupta RK & The COVID-19 Genomics UK (COG-UK) Consortium (2021) Cell Reports 35, 109292.
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England.
Volz E, Mishra S, Chand M, Barrett JC, Johnson R, Geidelberg L, Hinsley WR, Laydon DJ, Dabrera G, O?Toole Á, Amato R, Ragonnet-Cronin M, Harrison I, Jackson B, Ariani CV, Boyd O, Loman NJ, McCrone JT, Gonçalves S, Jorgensen D, Myers R, Hill V, Jackson DK, Gaythorpe K, Groves N, Sillitoe J, Kwiatkowski DP, Koshy C, Ash A, Wise E, Moore N, Mori M, Cortes N, Lynch J, Kidd S, Fairley DJ, Curran T, McKenna JP, Adams H, Fraser C, Golubchik T, Bonsall D, Hassan-Ibrahim MO, Malone CS, Cogger BJ, Wantoch M, Reynolds N, Warne B, Maksimovic J, Spellman K, McCluggage K, John M, Beer R, Afifi S, Morgan S, Marchbank A, Price A, Kitchen C, Gulliver H, Merrick I, Southgate J, Guest M, Munn R, Workman T, Connor TR, Fuller W, Bresner C, Snell LB, Patel A, Charalampous T, Nebbia G, Batra R, Edgeworth J, Robson SC, Beckett AH, Aanensen DM, Underwood AP, Yeats CA, Abudahab K, Taylor BEW, Menegazzo M, Clark G, Smith W, Khakh M, Fleming VM, Lister MM, Howson-Wells HC, Berry L, Boswell T, Joseph A, Willingham I, Jones C, Holmes C, Bird P, Helmer T, Fallon K, Tang J, Raviprakash V, Campbell S, Sheriff N, Blakey V, Williams L-A, Loose MW, Holmes N, Moore C, Carlile M, Wright V, Sang F, Debebe J, Coll F, Signell AW, Betancor G, Wilson HD, Eldirdiri S, Kenyon A, Davis T, Pybus OG, du Plessis L, Zarebski AE, Raghwani J, Kraemer MUG, Francois S, Attwood SW, Vasylyeva TI, Zamudio ME, Gutierrez B, Torok ME, Hamilton WL, Goodfellow IG, Hall G, Jahun AS, Chaudhry Y, Hosmillo M, Pinckert ML, Georgana I, Moses S, Lowe H, Bedford L, Moore J, Stonehouse S, Fisher CL, Awan AR, BoYes J, Breuer J, Harris KA, Brown JR, Shah D, Atkinson L, Lee JCD, Storey N, Flaviani F, Alcolea-Medina A, Williams R, Vernet G, Chapman MR, Levett LJ, Heaney J, Chatterton W, Pusok M, Xu-McCrae L, Smith DL, Bashton M, Young GR, Holmes A, Randell PA, Cox A, Madona P, Bolt F, Price J, Mookerjee S, Ragonnet-Cronin M, Nascimento FF, Jorgensen D, Siveroni I, Johnson R, Boyd O, Geidelberg L, Volz EM, Rowan A, Taylor GP, Smollett KL, Loman NJ, Quick J, McMurray C, Stockton J, Nicholls S, Rowe W, Poplawski R, McNally A, Nunez RTM, Mason J, Robinson TI, O?Toole E, Watts J, Breen C, Cowell A, Sluga G, Machin NW, Ahmad SSY, George RP, Halstead F, Sivaprakasam V, Hogsden W, Illingworth CJ, Jackson C, Thomson EC, Shepherd JG, Asamaphan P, Niebel MO, Li KK, Shah RN, Jesudason NG, Tong L, Broos A, Mair D, Nichols J, Carmichael SN, Nomikou K, Aranday-Cortes E, Johnson N, Starinskij I, da Silva Filipe A, Robertson DL, Orton RJ, Hughes J, Vattipally S, Singer JB, Nickbakhsh S, Hale AD, Macfarlane-Smith LR, Harper KL, Carden H, Taha Y, Payne BAI, Burton-Fanning S, Waugh S, Collins J, Eltringham G, Rushton S, O?Brien S, Bradley A, Maclean A, Mollett G, Blacow R, Templeton KE, McHugh MP, Dewar R, Wastenge E, Dervisevic S, Stanley R, Meader EJ, Coupland L, Smith L, Graham C, Barton E, Padgett D, Scott G, Swindells E, Greenaway J, Nelson A, McCann CM, Yew WC, Andersson M, Peto T, Justice A, Eyre D, Crook D, Sloan TJ, Duckworth N, Walsh S, Chauhan AJ, Glaysher S, Bicknell K, Wyllie S, Elliott S, Lloyd A, Impey R, Levene N, Monaghan L, Bradley DT, Wyatt T, Allara E, Pearson C, Osman H, Bosworth A, Robinson E, Muir P, Vipond IB, Hopes R, Pymont HM, Hutchings S, Curran MD, Parmar S, Lackenby A, Mbisa T, Platt S, Miah S, Bibby D, Manso C, Hubb J, Ramsay M, Bradshaw D, Thornton A, Schaefer U, Gallagher E, Lee D, Williams D, Ellaby N, Hartman H, Manesis N, Patel V, Bishop C, Chalker V, Ledesma J, Twohig KA, Holden MTG, Shaaban S, Birchley A, Adams A, Davies A, Gaskin A, Plimmer A, Gatica-Wilcox B, McKerr C, Moore C, Williams C, Heyburn D, Lacy ED, Hilvers E, Downing F, Shankar G, Jones H, Asad H, Coombes J, Watkins J, Evans JM, Fina L, Gifford L, Gilbert L, Graham L, Perry M, Morgan M, Bull M, Cronin M, Pacchiarini N, Craine N, Jones R, Howe R, Corden S, Rey S, Kumziene-Summerhayes S, Taylor S, Cottrell S, Jones S, Edwards S, O?Grady J, Page AJ, Mather AE, Baker DJ, Rudder S, Aydin A, Kay GL, Trotter AJ, Alikhan N-F, de Oliveira Martins L, Le-Viet T, Meadows L, Casey A, Ratcliffe L, Simpson DA, Molnar Z, Thompson T, Acheson E, Masoli JAH, Knight BA, Ellard S, Auckland C, Jones CR, Mahungu TW, Irish-Tavares D, Haque T, Hart J, Witele E, Fenton ML, Dadrah A, Symmonds A, Saluja T, Bourgeois Y, Scarlett GP, Loveson KF, Goudarzi S, Fearn C, Cook K, Dent H, Paul H, Partridge DG, Raza M, Evans C, Johnson K, Liggett S, Baker P, Bonner S, Essex S, Lyons RA, Saeed K, Mahanama AIK, Samaraweera B, Silveira S, Pelosi E, Wilson-Davies E, Williams RJ, Kristiansen M, Roy S, Williams CA, Cotic M, Bayzid N, Westhorpe AP, Hartley JA, Jannoo R, Lowe HL, Karamani A, Ensell L, Prieto JA, Jeremiah S, Grammatopoulos D, Pandey S, Berry L, Jones K, Richter A, Beggs A, Best A, Percival B, Mirza J, Megram O, Mayhew M, Crawford L, Ashcroft F, Moles-Garcia E, Cumley N, Smith CP, Bucca G, Hesketh AR, Blane B, Girgis ST, Leek D, Sridhar S, Forrest S, Cormie C, Gill HK, Dias J, Higginson EE, Maes M, Young J, Kermack LM, Gupta RK, Ludden C, Peacock SJ, Palmer S, Churcher CM, Hadjirin NF, Carabelli AM, Brooks E, Smith KS, Galai K, McManus GM, Ruis C, Davidson RK, Rambaut A, Williams T, Balcazar CE, Gallagher MD, O?Toole Á, Rooke S, Hill V, Williamson KA, Stanton TD, Michell SL, Bewshea CM, Temperton B, Michelsen ML, Warwick-Dugdale J, Manley R, Farbos A, Harrison JW, Sambles CM, Studholme DJ, Jeffries AR, Darby AC, Hiscox JA, Paterson S, Iturriza-Gomara M, Jackson KA, Lucaci AO, Vamos EE, Hughes M, Rainbow L, Eccles R, Nelson C, Whitehead M, Turtle L, Haldenby ST, Gregory R, Gemmell M, Wierzbicki C, Webster HJ, de Silva TI, Smith N, Angyal A, Lindsey BB, Groves DC, Green LR, Wang D, Freeman TM, Parker MD, Keeley AJ, Parsons PJ, Tucker RM, Brown R, Wyles M, Whiteley M, Zhang P, Gallis M, Louka SF, Constantinidou C, Unnikrishnan M, Ott S, Cheng JKJ, Bridgewater HE, Frost LR, Taylor-Joyce G, Stark R, Baxter L, Alam MT, Brown PE, Aggarwal D, Cerda AC, Merrill TV, Wilson RE, McClure PC, Chappell JG, Tsoleridis T, Ball J, Buck D, Todd JA, Green A, Trebes A, MacIntyre-Cockett G, de Cesare M, Alderton A, Amato R, Beale MA, Beaver C, Bellis KL, Betteridge E, Bonfield J, Danesh J, Dorman MJ, Drury E, Farr BW, Foulser L, Goncalves S, Goodwin S, Gourtovaia M, Harrison EM, Jamrozy D, Johnston I, Kane L, Kay S, Keatley J-P, Langford CF, Lawniczak M, Letchford L, Livett R, Lo S, Martincorena I, McGuigan S, Nelson R, Palmer S, Park NR, Patel M, Prestwood L, Puethe C, Quail MA, Rajatileka S, Scott C, Shirley L, Chapman MHS, Thurston SAJ, Tonkin-Hill G, Weldon D, Rajan D, Bronner IF, Aigrain L, Redshaw NM, Lensing SV, Davies R, Whitwham A, Liddle J, Lewis K, Tovar-Corona JM, Leonard S, Durham J, Bassett AR, McCarthy S, Moll RJ, James K, Oliver K, Makunin A, Gunson RN, Flaxman S, Ratmann O, Bhatt S, Hopkins S, Gandy A, Ferguson NM & The COVID-19 Genomics UK (COG-UK) consortium (2021) Nature 593, 266-269.
SARS-CoV-2 evolution during treatment of chronic infection.
Kemp SA, Collier DA, Datir RP, Ferreira IATM, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N, Baker S, Dougan G, Hess C, Kingston N, Lehner PJ, Lyons PA, Matheson NJ, Owehand WH, Saunders C, Summers C, Thaventhiran JED, Toshner M, Weekes MP, Bucke A, Calder J, Canna L, Domingo J, Elmer A, Fuller S, Harris J, Hewitt S, Kennet J, Jose S, Kourampa J, Meadows A, O?Brien C, Price J, Publico C, Rastall R, Ribeiro C, Rowlands J, Ruffolo V, Tordesillas H, Bullman B, Dunmore BJ, Fawke S, Gräf S, Hodgson J, Huang C, Hunter K, Jones E, Legchenko E, Matara C, Martin J, Mescia F, O?Donnell C, Pointon L, Pond N, Shih J, Sutcliffe R, Tilly T, Treacy C, Tong Z, Wood J, Wylot M, Bergamaschi L, Betancourt A, Bower G, Cossetti C, De Sa A, Epping M, Fawke S, Gleadall N, Grenfell R, Hinch A, Huhn O, Jackson S, Jarvis I, Lewis D, Marsden J, Nice F, Okecha G, Omarjee O, Perera M, Richoz N, Romashova V, Yarkoni NS, Sharma R, Stefanucci L, Stephens J, Strezlecki M, Turner L, De Bie EMDD, Bunclark K, Josipovic M, Mackay M, Rossi S, Selvan M, Spencer S, Yong C, Ansaripour A, Michael A, Mwaura L, Patterson C, Polwarth G, Polgarova P, di Stefano G, Fahey C, Michel R, Bong S-H, Coudert JD, Holmes E, Allison J, Butcher H, Caputo D, Clapham-Riley D, Dewhurst E, Furlong A, Graves B, Gray J, Ivers T, Kasanicki M, Le Gresley E, Linger R, Meloy S, Muldoon F, Ovington N, Papadia S, Phelan I, Stark H, Stirrups KE, Townsend P, Walker N, Webster J, Robson SC, Loman NJ, Connor TR, Golubchik T, Martinez Nunez RT, Ludden C, Corden S, Johnston I, Bonsall D, Smith CP, Awan AR, Bucca G, Estee Torok M, Saeed K, Prieto JA, Jackson DK, Hamilton WL, Snell LB, Moore C, Harrison EM, Goncalves S, Fairley DJ, Loose MW, Watkins J, Livett R, Moses S, Amato R, Nicholls S, Bull M, Smith DL, Barrett J, Aanensen DM, Curran MD, Parmar S, Aggarwal D, Shepherd JG, Parker MD, Glaysher S, Bashton M, Underwood AP, Pacchiarini N, Loveson KF, Carabelli AM, Templeton KE, Langford CF, Sillitoe J, de Silva TI, Wang D, Kwiatkowski D, Rambaut A, O?Grady J, Cottrell S, Holden MTG, Thomson EC, Osman H, Andersson M, Chauhan AJ, Hassan-Ibrahim MO, Lawniczak M, Alderton A, Chand M, Constantinidou C, Unnikrishnan M, Darby AC, Hiscox JA, Paterson S, Martincorena I, Robertson DL, Volz EM, Page AJ, Pybus OG, Bassett AR, Ariani CV, Spencer Chapman MH, Li KK, Shah RN, Jesudason NG, Taha Y, McHugh MP, Dewar R, Jahun AS, McMurray C, Pandey S, McKenna JP, Nelson A, Young GR, McCann CM, Elliott S, Lowe H, Temperton B, Roy S, Price A, Rey S, Wyles M, Rooke S, Shaaban S, de Cesare M, Letchford L, Silveira S, Pelosi E, Wilson-Davies E, Hosmillo M, O?Toole Á, Hesketh AR, Stark R, du Plessis L, Ruis C, Adams H, Bourgeois Y, Michell SL, Gramatopoulos D, Edgeworth J, Breuer J, Todd JA, Fraser C, Buck D, John M, Kay GL, Palmer S, Peacock SJ, Heyburn D, Weldon D, Robinson E, McNally A, Muir P, Vipond IB, Boyes J, Sivaprakasam V, Salluja T, Dervisevic S, Meader EJ, Park NR, Oliver K, Jeffries AR, Ott S, da Silva Filipe A, Simpson DA, Williams C, Masoli JAH, Knight BA, Jones CR, Koshy C, Ash A, Casey A, Bosworth A, Ratcliffe L, Xu-McCrae L, Pymont HM, Hutchings S, Berry L, Jones K, Halstead F, Davis T, Holmes C, Iturriza-Gomara M, Lucaci AO, Randell PA, Cox A, Madona P, Harris KA, Brown JR, Mahungu TW, Irish-Tavares D, Haque T, Hart J, Witele E, Fenton ML, Liggett S, Graham C, Swindells E, Collins J, Eltringham G, Campbell S, McClure PC, Clark G, Sloan TJ, Jones C, Lynch J, Warne B, Leonard S, Durham J, Williams T, Haldenby ST, Storey N, Alikhan N-F, Holmes N, Moore C, Carlile M, Perry M, Craine N, Lyons RA, Beckett AH, Goudarzi S, Fearn C, Cook K, Dent H, Paul H, Davies R, Blane B, Girgis ST, Beale MA, Bellis KL, Dorman MJ, Drury E, Kane L, Kay S, McGuigan S, Nelson R, Prestwood L, Rajatileka S, Batra R, Williams RJ, Kristiansen M, Green A, Justice A, Mahanama AIK, Samaraweera B, Hadjirin NF, Quick J, Poplawski R, Kermack LM, Reynolds N, Hall G, Chaudhry Y, Pinckert ML, Georgana I, Moll RJ, Thornton A, Myers R, Stockton J, Williams CA, Yew WC, Trotter AJ, Trebes A, MacIntyre-Cockett G, Birchley A, Adams A, Plimmer A, Gatica-Wilcox B, McKerr C, Hilvers E, Jones H, Asad H, Coombes J, Evans JM, Fina L, Gilbert L, Graham L, Cronin M, Kumziene-Summerhayes S, Taylor S, Jones S, Groves DC, Zhang P, Gallis M, Louka SF, Starinskij I, Jackson C, Gourtovaia M, Tonkin-Hill G, Lewis K, Tovar-Corona JM, James K, Baxter L, Alam MT, Orton RJ, Hughes J, Vattipally S, Ragonnet-Cronin M, Nascimento FF, Jorgensen D, Boyd O, Geidelberg L, Zarebski AE, Raghwani J, Kraemer MUG, Southgate J, Lindsey BB, Freeman TM, Keatley J-P, Singer JB, de Oliveira Martins L, Yeats CA, Abudahab K, Taylor BEW, Menegazzo M, Danesh J, Hogsden W, Eldirdiri S, Kenyon A, Mason J, Robinson TI, Holmes A, Price J, Hartley JA, Curran T, Mather AE, Shankar G, Jones R, Howe R, Morgan S, Wastenge E, Chapman MR, Mookerjee S, Stanley R, Smith W, Peto T, Eyre D, Crook D, Vernet G, Kitchen C, Gulliver H, Merrick I, Guest M, Munn R, Bradley DT, Wyatt T, Beaver C, Foulser L, Palmer S, Churcher CM, Brooks E, Smith KS, Galai K, McManus GM, Bolt F, Coll F, Meadows L, Attwood SW, Davies A, De Lacy E, Downing F, Edwards S, Scarlett GP, Jeremiah S, Smith N, Leek D, Sridhar S, Forrest S, Cormie C, Gill HK, Dias J, Higginson EE, Maes M, Young J, Wantoch M, Jamrozy D, Lo S, Patel M, Hill V, Bewshea CM, Ellard S, Auckland C, Harrison I, Bishop C, Chalker V, Richter A, Beggs A, Best A, Percival B, Mirza J, Megram O, Mayhew M, Crawford L, Ashcroft F, Moles-Garcia E, Cumley N, Hopes R, Asamaphan P, Niebel MO, Gunson RN, Bradley A, Maclean A, Mollett G, Blacow R, Bird P, Helmer T, Fallon K, Tang J, Hale AD, Macfarlane-Smith LR, Harper KL, Carden H, Machin NW, Jackson KA, Ahmad SSY, George RP, Turtle L, O?Toole E, Watts J, Breen C, Cowell A, Alcolea-Medina A, Charalampous T, Patel A, Levett LJ, Heaney J, Rowan A, Taylor GP, Shah D, Atkinson L, Lee JCD, Westhorpe AP, Jannoo R, Lowe HL, Karamani A, Ensell L, Chatterton W, Pusok M, Dadrah A, Symmonds A, Sluga G, Molnar Z, Baker P, Bonner S, Essex S, Barton E, Padgett D, Scott G, Greenaway J, Payne BAI, Burton-Fanning S, Waugh S, Raviprakash V, Sheriff N, Blakey V, Williams L-A, Moore J, Stonehouse S, Smith L, Davidson RK, Bedford L, Coupland L, Wright V, Chappell JG, Tsoleridis T, Ball J, Khakh M, Fleming VM, Lister MM, Howson-Wells HC, Berry L, Boswell T, Joseph A, Willingham I, Duckworth N, Walsh S, Wise E, Moore N, Mori M, Cortes N, Kidd S, Williams R, Gifford L, Bicknell K, Wyllie S, Lloyd A, Impey R, Malone CS, Cogger BJ, Levene N, Monaghan L, Keeley AJ, Partridge DG, Raza M, Evans C, Johnson K, Abnizova I, Aigrain L, Alderton A, Ali M, Allen L, Amato R, Anderson R, Ariani C, Austin-Guest S, Bala S, Barrett J, Bassett A, Battleday K, Beal J, Beale M, Beaver C, Bellany S, Bellerby T, Bellis K, Berger D, Berriman M, Betteridge E, Bevan P, Binley S, Bishop J, Blackburn K, Bonfield J, Boughton N, Bowker S, Brendler-Spaeth T, Bronner I, Brooklyn T, Buddenborg SK, Bush R, Caetano C, Cagan A, Carter N, Cartwright J, Monteiro TC, Chapman L, Chillingworth T-J, Clapham P, Clark R, Clarke A, Clarke C, Cole D, Cook E, Coppola M, Cornell L, Cornwell C, Corton C, Crackett A, Cranage A, Craven H, Craw S, Crawford M, Cutts T, Dabrowska M, Davies M, Davies R, Dawson J, Day C, Densem A, Dibling T, Dockree C, Dodd D, Dogga S, Dorman M, Dougan G, Dougherty M, Dove A, Drummond L, Drury E, Dudek M, Durham J, Durrant L, Easthope E, Eckert S, Ellis P, Farr B, Fenton M, Ferrero M, Flack N, Fordham H, Forsythe G, Foulser L, Francis M, Fraser A, Freeman A, Galvin A, Garcia-Casado M, Gedny A, Girgis S, Glover J, Goncalves S, Goodwin S, Gould O, Gourtovaia M, Gray A, Gray E, Griffiths C, Gu Y, Guerin F, Hamilton W, Hanks H, Harrison E, Harrott A, Harry E, Harvison J, Heath P, Hernandez-Koutoucheva A, Hobbs R, Holland D, Holmes S, Hornett G, Hough N, Huckle L, Hughes-Hallet L, Hunter A, Inglis S, Iqbal S, Jackson A, Jackson D, James K, Jamrozy D, Verdejo CJ, Johnston I, Jones M, Kallepally K, Kane L, Kay K, Kay S, Keatley J, Keith A, King A, Kitchin L, Kleanthous M, Klimekova M, Korlevic P, Krasheninnkova K, Lane G, Langford C, Laverack A, Law K, Lawniczak M, Lensing S, Leonard S, Letchford L, Lewis K, Lewis-Wade A, Liddle J, Lin Q, Lindsay S, Linsdell S, Livett R, Lo S, Long R, Lovell J, Lovell J, Ludden C, Mack J, Maddison M, Makunin A, Mamun I, Mansfield J, Marriott N, Martin M, Martincorena I, Mayho M, McCarthy S, McClintock J, McGuigan S, McHugh S, McMinn L, Meadows C, Mobley E, Moll R, Morra M, Morrow L, Murie K, Nash S, Nathwani C, Naydenova P, Neaverson A, Nelson R, Nerou E, Nicholson J, Nimz T, Noell GG, O?Meara S, Ohan V, Oliver K, Olney C, Ormond D, Oszlanczi A, Palmer S, Pang YF, Pardubska B, Park N, Parmar A, Patel G, Patel M, Payne M, Peacock S, Petersen A, Plowman D, Preston T, Prestwood L, Puethe C, Quail M, Rajan D, Rajatileka S, Rance R, Rawlings S, Redshaw N, Reynolds J, Reynolds M, Rice S, Richardson M, Roberts C, Robinson K, Robinson M, Robinson D, Rogers H, Rojo EM, Roopra D, Rose M, Rudd L, Sadri R, Salmon N, Saul D, Schwach F, Scott C, Seekings P, Shirley L, Sillitoe J, Simms A, Sinnott M, Sivadasan S, Siwek B, Sizer D, Skeldon K, Skelton J, Slater-Tunstill J, Sloper L, Smerdon N, Smith C, Smith C, Smith J, Smith K, Smith M, Smith S, Smith T, Sneade L, Soria CD, Sousa C, Souster E, Sparkes A, Spencer-Chapman M, Squares J, Stanley R, Steed C, Stickland T, Still I, Stratton M, Strickland M, Swann A, Swiatkowska A, Sycamore N, Swift E, Symons E, Szluha S, Taluy E, Tao N, Taylor K, Taylor S, Thompson S, Thompson M, Thomson M, Thomson N, Thurston S, Tonkin-Hill G, Toombs D, Topping B, Tovar-Corona J, Ungureanu D, Uphill J, Urbanova J, Jansen Van P, Vancollie V, Voak P, Walker D, Walker M, Waller M, Ward G, Weatherhogg C, Webb N, Weldon D, Wells A, Wells E, Westwood L, Whipp T, Whiteley T, Whitton G, Whitwham A, Widaa S, Williams M, Wilson M, Wright S, Betteridge E, Farr BW, Goodwin S, Quail MA, Scott C, Shirley L, Thurston SAJ, Rajan D, Bronner IF, Aigrain L, Redshaw NM, Lensing SV, McCarthy S, Makunin A, Balcazar CE, Gallagher MD, Williamson KA, Stanton TD, Michelsen ML, Warwick-Dugdale J, Manley R, Farbos A, Harrison JW, Sambles CM, Studholme DJ, Lackenby A, Mbisa T, Platt S, Miah S, Bibby D, Manso C, Hubb J, Dabrera G, Ramsay M, Bradshaw D, Schaefer U, Groves N, Gallagher E, Lee D, Williams D, Ellaby N, Hartman H, Manesis N, Patel V, Ledesma J, Twohig KA, Allara E, Pearson C, Cheng JKJ, Bridgewater HE, Frost LR, Taylor-Joyce G, Brown PE, Tong L, Broos A, Mair D, Nichols J, Carmichael SN, Smollett KL, Nomikou K, Aranday-Cortes E, Johnson N, Nickbakhsh S, Vamos EE, Hughes M, Rainbow L, Eccles R, Nelson C, Whitehead M, Gregory R, Gemmell M, Wierzbicki C, Webster HJ, Fisher CL, Signell AW, Betancor G, Wilson HD, Nebbia G, Flaviani F, Cerda AC, Merrill TV, Wilson RE, Cotic M, Bayzid N, Thompson T, Acheson E, Rushton S, O?Brien S, Baker DJ, Rudder S, Aydin A, Sang F, Debebe J, Francois S, Vasylyeva TI, Zamudio ME, Gutierrez B, Marchbank A, Maksimovic J, Spellman K, McCluggage K, Morgan M, Beer R, Afifi S, Workman T, Fuller W, Bresner C, Angyal A, Green LR, Parsons PJ, Tucker RM, Brown R, Whiteley M, Bonfield J, Puethe C, Whitwham A, Liddle J, Rowe W, Siveroni I, Le-Viet T, Gaskin A, Johnson R, Sharrocks K, Blane E, Modis Y, Leigh KE, Briggs JAG, van Gils MJ, Smith KGC, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth CJR, McCoy LE, Gupta RK, The CITIID-NIHR BioResource COVID-19 Collaboration, Principal investigators, CRF & volunteer research nurses, Sample logistics, Sample processing (2021) Nature 592, 277-282.
Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.
Rambaut A, Holmes EC, O'Toole Á, Hill V, McCrone JT, Ruis C, du Plessis L & Pybus OG (2021) Nature microbiology 6, 415.
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.
Volz E, Hill V, McCrone JT, Price A, Jorgensen D, O'Toole Á, Southgate J, Johnson R, Jackson B, Nascimento FF, Rey SM, Nicholls SM, Colquhoun RM, da Silva Filipe A, Shepherd J, Pascall DJ, Shah R, Jesudason N, Li K, Jarrett R, Pacchiarini N, Bull M, Geidelberg L, Siveroni I, Koshy C, Wise E, Cortes N, Lynch J, Kidd S, Mori M, Fairley DJ, Curran T, McKenna JP, Adams H, Fraser C, Golubchik T, Bonsall D, Moore C, Caddy SL, Khokhar FA, Wantoch M, Reynolds N, Warne B, Maksimovic J, Spellman K, McCluggage K, John M, Beer R, Afifi S, Morgan S, Marchbank A, Kitchen C, Gulliver H, Merrick I, Guest M, Munn R, Workman T, Connor TR, Fuller W, Bresner C, Snell LB, Charalampous T, Nebbia G, Batra R, Edgeworth J, Robson SC, Beckett A, Loveson KF, Aanensen DM, Underwood AP, Yeats CA, Abudahab K, Taylor BEW, Menegazzo M, Clark G, Smith W, Khakh M, Fleming VM, Lister MM, Howson-Wells HC, Berry L, Boswell T, Joseph A, Willingham I, Bird P, Helmer T, Fallon K, Holmes C, Tang J, Raviprakash V, Campbell S, Sheriff N, Loose MW, Holmes N, Moore C, Carlile M, Wright V, Sang F, Debebe J, Coll F, Signell AW, Betancor G, Wilson HD, Feltwell T, Houldcroft CJ, Eldirdiri S, Kenyon A, Davis T, Pybus O, du Plessis L, Zarebski A, Raghwani J, Kraemer M, Francois S, Attwood S, Vasylyeva T, Torok ME, Hamilton WL, Goodfellow IG, Hall G, Jahun AS, Chaudhry Y, Hosmillo M, Pinckert ML, Georgana I, Yakovleva A, Meredith LW, Moses S, Lowe H, Ryan F, Fisher CL, Awan AR, Boyes J, Breuer J, Harris KA, Brown JR, Shah D, Atkinson L, Lee JCD, Alcolea-Medina A, Moore N, Cortes N, Williams R, Chapman MR, Levett LJ, Heaney J, Smith DL, Bashton M, Young GR, Allan J, Loh J, Randell PA, Cox A, Madona P, Holmes A, Bolt F, Price J, Mookerjee S, Rowan A, Taylor GP, Ragonnet-Cronin M, Johnson R, Boyd O, Volz EM, Brunker K, Smollett KL, Loman NJ, Quick J, McMurray C, Stockton J, Nicholls S, Rowe W, Poplawski R, Martinez-Nunez RT, Mason J, Robinson TI, O'Toole E, Watts J, Breen C, Cowell A, Ludden C, Sluga G, Machin NW, Ahmad SSY, George RP, Halstead F, Sivaprakasam V, Thomson EC, Shepherd JG, Asamaphan P, Niebel MO, Li KK, Shah RN, Jesudason NG, Parr YA, Tong L, Broos A, Mair D, Nichols J, Carmichael SN, Nomikou K, Aranday-Cortes E, Johnson N, Starinskij I, Robertson DL, Orton RJ, Hughes J, Vattipally S, Singer JB, Hale AD, Macfarlane-Smith LR, Harper KL, Taha Y, Payne BAI, Burton-Fanning S, Waugh S, Collins J, Eltringham G, Templeton KE, McHugh MP, Dewar R, Wastenge E, Dervisevic S, Stanley R, Prakash R, Stuart C, Elumogo N, Sethi DK, Meader EJ, Coupland LJ, Potter W, Graham C, Barton E, Padgett D, Scott G, Swindells E, Greenaway J, Nelson A, Yew WC, Resende Silva PC, Andersson M, Shaw R, Peto T, Justice A, Eyre D, Crooke D, Hoosdally S, Sloan TJ, Duckworth N, Walsh S, Chauhan AJ, Glaysher S, Bicknell K, Wyllie S, Butcher E, Elliott S, Lloyd A, Impey R, Levene N, Monaghan L, Bradley DT, Allara E, Pearson C, Muir P, Vipond IB, Hopes R, Pymont HM, Hutchings S, Curran MD, Parmar S, Lackenby A, Mbisa T, Platt S, Miah S, Bibby D, Manso C, Hubb J, Chand M, Dabrera G, Ramsay M, Bradshaw D, Thornton A, Myers R, Schaefer U, Groves N, Gallagher E, Lee D, Williams D, Ellaby N, Harrison I, Hartman H, Manesis N, Patel V, Bishop C, Chalker V, Osman H, Bosworth A, Robinson E, Holden MTG, Shaaban S, Birchley A, Adams A, Davies A, Gaskin A, Plimmer A, Gatica-Wilcox B, McKerr C, Moore C, Williams C, Heyburn D, De Lacy E, Hilvers E, Downing F, Shankar G, Jones H, Asad H, Coombes J, Watkins J, Evans JM, Fina L, Gifford L, Gilbert L, Graham L, Perry M, Morgan M, Cronin M, Craine N, Jones R, Howe R, Corden S, Rey S, Kumziene-Summerhayes S, Taylor S, Cottrell S, Jones S, Edwards S, O'Grady J, Page AJ, Wain J, Webber MA, Mather AE, Baker DJ, Rudder S, Yasir M, Thomson NM, Aydin A, Tedim AP, Kay GL, Trotter AJ, Gilroy RAJ, Alikhan N-F, de Oliveira Martins L, Le-Viet T, Meadows L, Kolyva A, Diaz M, Bell A, Gutierrez AV, Charles IG, Adriaenssens EM, Kingsley RA, Casey A, Simpson DA, Molnar Z, Thompson T, Acheson E, Masoli JAH, Knight BA, Hattersley A, Ellard S, Auckland C, Mahungu TW, Irish-Tavares D, Haque T, Bourgeois Y, Scarlett GP, Partridge DG, Raza M, Evans C, Johnson K, Liggett S, Baker P, Essex S, Lyons RA, Caller LG, Castellano S, Williams RJ, Kristiansen M, Roy S, Williams CA, Dyal PL, Tutill HJ, Panchbhaya YN, Forrest LM, Niola P, Findlay J, Brooks TT, Gavriil A, Mestek-Boukhibar L, Weeks S, Pandey S, Berry L, Jones K, Richter A, Beggs A, Smith CP, Bucca G, Hesketh AR, Harrison EM, Peacock SJ, Palmer S, Churcher CM, Bellis KL, Girgis ST, Naydenova P, Blane B, Sridhar S, Ruis C, Forrest S, Cormie C, Gill HK, Dias J, Higginson EE, Maes M, Young J, Kermack LM, Hadjirin NF, Aggarwal D, Griffith L, Swingler T, Davidson RK, Rambaut A, Williams T, Balcazar CE, Gallagher MD, O'Toole Á, Rooke S, Colquhoun R, Ashworth J, McCrone JT, Scher E, Yu X, Williamson KA, Stanton TD, Michell SL, Bewshea CM, Temperton B, Michelsen ML, Warwick-Dugdale J, Manley R, Farbos A, Harrison JW, Sambles CM, Studholme DJ, Jeffries AR, Darby AC, Hiscox JA, Paterson S, Iturriza-Gomara M, Jackson KA, Lucaci AO, Vamos EE, Hughes M, Rainbow L, Eccles R, Nelson C, Whitehead M, Turtle L, Haldenby ST, Gregory R, Gemmell M, Kwiatkowski D, de Silva TI, Smith N, Angyal A, Lindsey BB, Groves DC, Green LR, Wang D, Freeman TM, Parker MD, Keeley AJ, Parsons PJ, Tucker RM, Brown R, Wyles M, Constantinidou C, Unnikrishnan M, Ott S, Cheng JKJ, Bridgewater HE, Frost LR, Taylor-Joyce G, Stark R, Baxter L, Alam MT, Brown PE, McClure PC, Chappell JG, Tsoleridis T, Ball J, Gramatopoulos D, Buck D, Todd JA, Green A, Trebes A, MacIntyre-Cockett G, de Cesare M, Langford C, Alderton A, Amato R, Goncalves S, Jackson DK, Johnston I, Sillitoe J, Palmer S, Lawniczak M, Berriman M, Danesh J, Livett R, Shirley L, Farr B, Quail M, Thurston S, Park N, Betteridge E, Weldon D, Goodwin S, Nelson R, Beaver C, Letchford L, Jackson DA, Foulser L, McMinn L, Prestwood L, Kay S, Kane L, Dorman MJ, Martincorena I, Puethe C, Keatley J-P, Tonkin-Hill G, Smith C, Jamrozy D, Beale MA, Patel M, Ariani C, Spencer-Chapman M, Drury E, Lo S, Rajatileka S, Scott C, James K, Buddenborg SK, Berger DJ, Patel G, Garcia-Casado MV, Dibling T, McGuigan S, Rogers HA, Hunter AD, Souster E, Neaverson AS, Goodfellow I, Pybus OG & COG-UK Consortium (2021) Cell 184, 64-7.50E+12.
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2.
O'Toole Á, Kraemer MUG, Hill V, Pybus OG, Watts A, Bogoch II, Khan K, Messina JP, Tegally H, Lessells RR, Giandhari J, Pillay S, Tumedi KA, Nyepetsi G, Kebabonye M, Matsheka M, Mine M, Tokajian S, Hassan H, Salloum T, Merhi G, Koweyes J, Geoghegan JL, de Ligt J, Ren X, Storey M, Freed NE, Pattabiraman C, Prasad P, Desai AS, Vasanthapuram R, Schulz TF, Steinbrück L, Stadler T, Parisi A, Bianco A, García de Viedma D, Buenestado-Serrano S, Borges V, Isidro J, Duarte S, Gomes JP, Zuckerman NS, Mandelboim M, Mor O, Seemann T, Arnott A, Draper J, Gall M, Rawlinson W, Deveson I, Schlebusch S, McMahon J, Leong L, Lim CK, Chironna M, Loconsole D, Bal A, Josset L, Holmes E, St George K, Lasek-Nesselquist E, Sikkema RS, Oude Munnink B, Koopmans M, Brytting M, Sudha rani V, Pavani S, Smura T, Heim A, Kurkela S, Umair M, Salman M, Bartolini B, Rueca M, Drosten C, Wolff T, Silander O, Eggink D, Reusken C, Vennema H, Park A, Carrington C, Sahadeo N, Carr M, Gonzalez G, de Oliveira T, Faria N & Rambaut A (2021) Wellcome Open Research 6, 121.
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2.
Lemey P, Hong SL, Hill V, Baele G, Poletto C, Colizza V, O'Toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A & Suchard MA (2020) Nature Communications 11, 5110.
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.
Rambaut A, Holmes EC, O'Toole Á, Hill V, McCrone JT, Ruis C, du Plessis L & Pybus OG (2020) Nature Microbiology 5, 1403-1407.
Early Insights from Statistical and Mathematical Modeling of Key Epidemiologic Parameters of COVID-19.
Biggerstaff M, Cowling BJ, Cucunub? ZM, Dinh L, Ferguson NM, Gao H, Hill V, Imai N, Johansson MA, Kada S, Morgan O, Pastore Y Piontti A, Polonsky JA, Prasad PV, Quandelacy TM, Rambaut A, Tappero JW, Vandemaele KA, Vespignani A, Warmbrod KL, Wong JY & WHO COVID-19 Modelling Parameters Group (2020) Emerging infectious diseases 26, e1-e14.
The emergence of SARS-CoV-2 in Europe and North America.
Worobey M, Pekar J, Larsen BB, Nelson MI, Hill V, Joy JB, Rambaut A, Suchard MA, Wertheim JO & Lemey P (2020) Science 370, 564-570.
Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.
Lu J, du Plessis L, Liu Z, Hill V, Kang M, Lin H, Sun J, François S, Kraemer MUG, Faria NR, McCrone JT, Peng J, Xiong Q, Yuan R, Zeng L, Zhou P, Liang C, Yi L, Liu J, Xiao J, Hu J, Liu T, Ma W, Li W, Su J, Zheng H, Peng B, Fang S, Su W, Li K, Sun R, Bai R, Tang X, Liang M, Quick J, Song T, Rambaut A, Loman N, Raghwani J, Pybus OG & Ke C (2020) Cell 181, 997-1003.
 
Andrew Rambaut, 2007