Evolutionary Inference, Phylogenetic Methods, Population Genetic Models
Relaxed Phylogenetics and Dating with Confidence.
Drummond AJ, Ho SYW, Phillips MJ & Rambaut A (2006) PLoS Biology 4, e88.
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences.
Shapiro B, Rambaut A & Drummond AJ (2006) Mol Biol Evol 23, 7-9.
Molecular dates for the "Cambrian explosion": the influence of prior assumptions.
Welch JJ, Fontanillas E & Bromham L (2005) Syst Biol 54, 672-678.
Molecular dating when rates vary.
Welch JJ & Bromham L (2005) Trends Ecol Evol 20, 320-327.
Bayesian coalescent inference of past population dynamics from molecular sequences.
Drummond AJ, Rambaut A & Shapiro B and Pybus OG (2005) Mol Biol Evol 22, 1185-1192.
Inference of viral evolutionary rates from molecular sequences.
Drummond A, Pybus OG & Rambaut A (2003) Adv Parasitology 54, 331-358.
Measurably evolving populations.
Drummond AJ, Pybus OG, Rambaut A, Forsberg R & Rodrigo AG (2003) Trends Ecol Evol 18, 481-488.
GENIE: estimating demographic history from molecular phylogenies.
Pybus OG & Rambaut A (2002) Bioinformatics 18, 1404-1405.
Inferring confidence sets of possibly misspecified gene trees.
Strimmer K & Rambaut A (2002) Proc Roy Soc B 269, 137-142.
An integrated framework for the inference of viral population history from reconstructed genealogies.
Pybus OG, Rambaut A & Harvey PH (2000) Genetics 155, 1429-1437.
Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies.
Rambaut A (2000) Bioinformatics 16, 395-399.
The power of relative rates tests depends on the data.
Bromham L, Penny D, Rambaut A & Hendy MD (2000) J Mol Evol 50, 296-301.
Estimating divergence dates from molecular sequences.
Rambaut A & Bromham L (1998) Mol Biol Evol 15, 442-448.
PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees.
Grassly NC, Adachi J & Rambaut A (1997) Comput Appl Biosci 13, 559-560.
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.
Rambaut A & Grassly NC (1997) Comput Appl Biosci 13, 235-238.
End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences.
Rambaut A, Harvey PH & Nee S (1997) Comput Appl Biosci 13, 303-306.
Inferring the population history of an epidemic from a phylogenetic tree.
Ong CK, Nee S, Rambaut A & Harvey PH (1996) J Theor Biol 182, 173-178.
Inferring population history from molecular phylogenies.
Nee S, Holmes EC, Rambaut A & Harvey PH (1995) Phil Trans Roy Soc B 349, 25-31.
Andrew Rambaut, 2007