Luiz Carvalho

Research Interests

PhD student working on statistical approaches to the phylodynamics of fast-evolving pathogens. Main interests include: transition kernels for MCMC in Bayesian phylogenetics, model adequacy, integrating epidemiological and (phylo) genomic information.

Publications

Total publications: 5
Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic.
Diehl WE, Lin AE, Grubaugh ND, Carvalho LM, Kim K, Kyawe PP, McCauley SM, Donnard E, Kucukural A, McDonel P, Schaffner SF, Garber M, Rambaut A, Andersen KG, Sabeti PC & Luban J (2016) Cell 167, 1088-1098.
Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.
Dudas G, Carvalho LM, Trevor Bedford, Andrew J Tatem, Guy Baele, Nuno Faria, Daniel Park, Jason Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah Caddy, Matt Cotten, Jonathan Dambrozio, Simon Dellicour, Antonino Di Caro, Joseph Diclaro, Sophie Duraffour, Mike Elmore, Lawrence Fakoli, Merle Gilbert, Sahr M Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald Grant, Bart Haagmans, Julian Hiscox, Umaru Jah, Brima Kargbo, Jeffrey Kugelman, Di Liu, Jia Lu, Christine Malboeuf, Suzanne Mate, David Matthews, Christian Matranga, Luke Meredith, James Qu, Joshua Quick, Susan Pas, My Phan, Georgios Poliakis, Chantal Reusken, Mariano Sanchez-Lockhart, Stephen Schaffner, John Schieffelin, Rachel Sealfon, Etienne Simon-Loriere, Saskia Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed Vandi, Simon Watson, Kendra West, Shannon Whitmer, Michael Wiley, Sarah Winnicki, Shirlee Wohl, Roman Wölfel, Nathan Yozwiak, Kristian Andersen, Sylvia Blyden, Fatorma Bolay, Bernice Dahn, Miles Carroll, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George Gao, Robert Garry, Ian Goodfellow, Stephan Günther, Christian Happi, Edward Holmes, Brima Kargbo, Paul Kellam, Marion Koopmans, Nicholas Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart Nichol, Tolbert Nyenswah, Gustavo Palacios, Oliver Pybus, Pardis Sabeti, Amadou Sall, Keïta Sakoba, Ute Ströeher, Isatta Wurie, Marc Suchard, Philippe Lemey & Rambaut A (2016) bioRxiv 071779
Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences".
Rambaut A, Dudas G, Carvalho LM, Park DJ, Yozwiak NL, Holmes EC & Andersen KG (2016) Science 353, 658.
Exploring the temporal structure of heterochronous sequences using TempEst.
Rambaut A, Lam TT, Carvalho LM & Pybus OG (2016) Virus Evolution 2, vew007.
πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
Bielejec F, Lemey P, Carvalho LM, Baele G, Rambaut A & Suchard MA (2014) BMC Bioinfomatics 15, 133.
 
Andrew Rambaut, 2007