Jonathan Bollback

Research Interests

External website.


Total publications: 20
Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation.
Guinane CM, Zakour NLB, Tormo-Mas MA, Weinert LA, Lowder BV, Cartwright RA, Smyth DS, Smyth CJ, Lindsay J, Gould KA, Witney A, Hinds J, Bollback JP, Rambaut A, Penades J & Fitzgerald JR (2010) Genome Biology and Evolution 2, 454-466.
Estimation of 2Nes from temporal allele frequency data.
Bollback JP, York T & Nielsen R (2008) Genetics 179, 497?502.
Genes under positive selection in Escherichia coli.
Petersen L, Bollback JP, Dimmic M, Hubisz M & Nielsen R (2007) Genome Res 17, 1336-1343.
Clonal interference is alleviated by high mutation rates in large populations.
Bollback JP & Huelsenbeck JP (2007) Mol Biol Evol 24, 1397-1406.
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.
Binladen J, Gilbert MT, Bollback JP, Panitz F, Bendixen C, Nielsen R & Willerslev E (2007) PLoS One 2, e197.
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA.
Freyhult EK, Bollback JP & Gardner PP (2007) Genome Res 17, 117-125.
Behavioral paternity predicts genetic paternity in satin bowerbirds, a species with a non-resource-based mating system.
Reynolds SM, Dryer K, Bollback JP, Uy JAC, Patricelli GL, Robson T, Borgia G & Braun MJ (2007) Auk 124, 857-867.
Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution.
Betancourt AJ & Bollback JP (2006) Curr Opin Genet Dev 16, 618-623.
SIMMAP: stochastic character mapping of discrete traits on phylogenies.
Bollback JP (2006) BMC Bioinformatics 7, 88.
Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil.
Conn JE, Vineis JH, Bollback JP, Onyabe DY, Wilkerson RC & Povoa MM (2006) Am J Trop Med Hyg 74, 798-806.
Posterior mapping and predictive distributions.
Bollback JP (2005) In "Statistical methods in Molecular Evolution", Springer-Verlag
True and false gharials: a nuclear gene phylogeny of crocodylia.
Harshman J, Huddleston CJ, Bollback JP, Parsons TJ & Braun MJ (2003) Syst Biol 52, 386-402.
Stochastic mapping of morphological characters.
Huelsenbeck JP, Nielsen R & Bollback JP (2003) Syst Biol 52, 131-158.
Inferring the root of a phylogenetic tree.
Huelsenbeck JP, Bollback JP & Levine AM (2002) Syst Biol 51, 32-43.
Bayesian model adequacy and choice in phylogenetics.
Bollback JP (2002) Mol Biol Evol 19, 1171-1180.
Isolation of polymorphic microsatellite markers from the malaria vector Anopheles darlingi.
Conn JE, Bollback JP, Onyabe DY, Robinson TN, Wilkerson RC & Povoa MM (2001) Mol Ecol Notes 1, 223-225.
Empirical and hierarchical Bayesian estimation of ancestral states.
Huelsenbeck JP & Bollback JP (2001) Syst Biol 50, 351-366.
Application of the likelihood function in phylogenetic analysis.
Huelsenbeck JP & Bollback JP (2001) In "Handbook of Statistical Genetics", John Wiley and Sons CH. 15, 415-439.
Bayesian inference of phylogeny and its impact on evolutionary biology.
Huelsenbeck JP, Ronquist F, Nielsen R & Bollback JP (2001) Science 294, 2310-2314.
Phylogeny, genome evolution, and host specificity of single-stranded RNA bacteriophage (Family Leviviridae).
Bollback JP & Huelsenbeck JP (2001) J Mol Evol 52, 117-128.
Andrew Rambaut, 2007